Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SP4011_RS09735 Genome accession   NZ_AP026968
Coordinates   1957073..1959031 (-) Length   652 a.a.
NCBI ID   WP_338619103.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952073..1964031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS09725 (SP4011_18790) amiA3 1953574..1955553 (-) 1980 WP_338619101.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS09730 (SP4011_18800) glf 1955789..1956889 (-) 1101 WP_338619102.1 UDP-galactopyranose mutase -
  SP4011_RS09735 (SP4011_18810) amiA3 1957073..1959031 (-) 1959 WP_338619103.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS09740 (SP4011_18820) amiA 1959258..1961225 (-) 1968 WP_338619105.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS09745 (SP4011_18830) - 1961495..1963105 (-) 1611 WP_338619106.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72603.74 Da        Isoelectric Point: 4.9827

>NTDB_id=99137 SP4011_RS09735 WP_338619103.1 1957073..1959031(-) (amiA3) [Streptococcus parapneumoniae strain SP4011]
MNTKKRVLSAGLTVAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTSIITNLVDGLLENDNYGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLTRPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKNNIIYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEVASKTLRNTLAPPTFVQVGDKTFGEVVASKLVNYGTEWSGINLAD
AQDAYFNKEKAQAKFAEAKKELTSQGVVFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNIVIDVQQLSTDDFNNVA
FLAPTAADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAKEDKEKITSLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKAKWEQESKKAI
EKAQKEAEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=99137 SP4011_RS09735 WP_338619103.1 1957073..1959031(-) (amiA3) [Streptococcus parapneumoniae strain SP4011]
ATGAATACAAAAAAGCGTGTCCTTAGTGCAGGCCTGACTGTTGCAGCTGCTTTGCTTTTAGCTGCTTGCGGTCAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTATTTATTAGACTACTACGCCGATA
ATACATCGATTATAACCAACCTAGTTGATGGTTTGCTTGAAAATGACAATTATGGAAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCGAGCGACGGTCTGACTTATACCTATAAATTGAGAAAAGATGCCAAATGGTTCACGGCTGACGGTGA
AGAGTACGCCCCAGTCAAGGCGCAAGATTTTGTGACAGGTATCAAGTACGCAGTGGATAATAAATCACAGGCCATTGACC
TGATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGATTTTTCTAAGGTTGGGGTTAAGGCC
ATTGATGACCAGACTGTTGAGTATACTTTGACACGCCCAGAACCTTACTGGAATTCAAAAACAACCAACAGTATTCTTTT
CCCGGTAAACGAAGAGTTTTTAAATTCAAAAGGGAAAGATTTTGGGACCCTATCTCCAGATAGCATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATCGAGTATGTGAAGAATCCGCATTACTATGATCATGACAAAGTA
TCGATTGAACACGTGAAATTAGCTTATTTTGATGGCTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCTTA
TTCAATCGCTGGGGTTTATCCAAATAGTTCTAACTTTGCCAAGACAAAGGAGAAATATAAGAATAATATCATTTATAGTT
TGCAGGATAAGACTTCTTGGTACTTCAATTTCAACGTTAACCGTAAGGCTTACAATCACACTGCTAAAACGACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTCTTGAACAAAAACTTCCGCCAAGCAGTGAACTTTGCCTTGGACCGCACAGCTTA
TTCTGCCCAGTCAAATGGGGAAGAGGTGGCTAGCAAGACCCTTCGTAACACCTTGGCGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTCGCTTCTAAATTGGTCAACTATGGTACAGAATGGTCAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGACAAGTCAAGGTGT
GGTCTTCCCAATTCACTTGGATGTGGCGGTTGATCAGACAAGCAAAAATGCCGTGACAGGTATGAACTCAGTTAAGCAGA
CCCTTGAATCAGTTTTAGGTGCTGATAACATTGTCATTGACGTTCAGCAACTTTCAACAGATGATTTTAATAACGTAGCC
TTCTTAGCGCCAACAGCAGCTGATCGTGACTACGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCGTCAAC
TTATCTCAATCCTTTCAATGCAGAGGATGGATTCTACCTTAAGATTTTTGGACTAGATGCCAAGGAAGATAAGGAAAAAA
TCACTAGCCTAGGTCTGGATACCTACACTAAGATGCTCAAAGATGCAGACAGTGAAAACAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCTATGTCAAGTGGTGGCACAGCATC
TGTAACCAAAGTGACGCCATTTACAAGAGGCTATTCATTGGTTGGCATTAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACCAAACAGTATGAAGAAGCCAAGGCCAAATGGGAGCAAGAAAGCAAAAAAGCAATT
GAAAAAGCTCAAAAAGAAGCAGAAAAACATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.685

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

50.228

100

0.506
  amiA Streptococcus salivarius strain HSISS4

50.152

100

0.505

Multiple sequence alignment