Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SP4011_RS09740 Genome accession   NZ_AP026968
Coordinates   1959258..1961225 (-) Length   655 a.a.
NCBI ID   WP_338619105.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954258..1966225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS09730 (SP4011_18800) glf 1955789..1956889 (-) 1101 WP_338619102.1 UDP-galactopyranose mutase -
  SP4011_RS09735 (SP4011_18810) amiA3 1957073..1959031 (-) 1959 WP_338619103.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS09740 (SP4011_18820) amiA 1959258..1961225 (-) 1968 WP_338619105.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS09745 (SP4011_18830) - 1961495..1963105 (-) 1611 WP_338619106.1 alpha-glucosidase -
  SP4011_RS09750 (SP4011_18840) - 1963258..1964742 (+) 1485 WP_338619108.1 DUF1846 domain-containing protein -
  SP4011_RS09755 (SP4011_18850) - 1964837..1965319 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72620.21 Da        Isoelectric Point: 5.0691

>NTDB_id=99138 SP4011_RS09740 WP_338619105.1 1959258..1961225(-) (amiA) [Streptococcus parapneumoniae strain SP4011]
MQSKKWLLGAGVTLSVALLLAACGKSEKNADAPKTFSYVYAVDPSSLDYSLTSKSSTSDVIGNVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLVEKSIKGLEAYVSGETNDFSTVG
VKALDDYTVEYTLNNPESFWNSKVTTATMLPVNEEFLNATGKDYGAPTPSSILYNGPYFLKSLISKSVIEYEKNPNYWDK
DNVKIDNVKLTFYDGSDQESLIRSFTQGAYTTARLFPASSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DESQKTSTKEALLNKNFRQALNFAFNRHAYTAQLNGEEGADKIIRNSLVPDNYVQVAGKTFGQLAQDELLKYGEQWKDVT
LTDGKDTIYNPTKAKSAFEKAKSELQAKGVSFPIHLDVPVEQTDVVAVQQTNSLKQSIEETLGTENVIIDVLQMTDNEKE
SITSQAKVPTQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVVAKVGLDEYKKLLDDAASETSNLD
KRYEKYAKAQAWVTDSSLLIPVASSGGSPMVSRTVPFTKAYSQVGIKGDPFIFKGMELQNDIVTTKEYDAAFKKWQKEKL
ESNAQYQKDLEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=99138 SP4011_RS09740 WP_338619105.1 1959258..1961225(-) (amiA) [Streptococcus parapneumoniae strain SP4011]
ATGCAATCGAAAAAGTGGCTCTTAGGAGCAGGAGTGACCTTGAGTGTGGCCCTTCTTTTGGCAGCTTGTGGGAAAAGTGA
AAAGAATGCAGATGCTCCCAAAACATTTTCTTATGTTTATGCAGTTGATCCATCATCCTTGGATTATAGCCTTACAAGTA
AAAGTTCAACTTCTGACGTAATAGGTAATGTCGTCGACGGTCTTTTAGAGAATGATAAATATGGAAATCTCATTCCTTCT
CTAGCAGAGGATTGGTCAGTTTCTAAAGATGGTTTGACTTACACTTACAAACTTCGTAAGGGGGTGAAGTGGTATACTTC
TGAAGGAGAAGAGTATGCGGAAGTTAAAGCTCAGGATTTTGTTACAGGTTTGAAACATGCAGCAGACGGAAAATCCGATG
GTCTTTCTTTGGTCGAGAAATCTATCAAAGGATTGGAGGCTTATGTTAGTGGTGAGACAAACGACTTCTCAACTGTAGGT
GTGAAAGCTCTTGATGATTATACGGTAGAATATACCCTTAATAACCCGGAAAGTTTTTGGAACTCTAAAGTAACCACTGC
AACCATGCTTCCTGTAAATGAAGAATTTTTGAATGCAACAGGCAAGGATTACGGAGCGCCAACTCCATCAAGTATTCTTT
ACAATGGCCCATATTTTTTGAAATCTTTGATTTCTAAATCTGTGATTGAATATGAAAAAAATCCTAACTATTGGGATAAG
GACAATGTCAAAATTGATAATGTTAAATTGACATTCTATGATGGTTCAGATCAAGAATCCTTAATTCGTAGCTTTACACA
AGGTGCCTATACCACTGCACGTCTTTTTCCAGCAAGCTCAAACTTTGAGTCAACTAAGAAAGAGTACGGAGATAAGATTG
TCTATAGTCCACAAGAGGCAACAAGCTACTACCTCACTGTGAACGTAAACCGCCAGTCTTACAATAAAACAGCTAAAACA
GATGAGTCACAAAAAACATCAACAAAAGAAGCTCTTCTCAATAAGAACTTCCGTCAGGCTCTTAATTTTGCATTTAATCG
CCACGCCTATACAGCTCAATTAAACGGTGAAGAGGGTGCGGATAAGATTATTCGTAATAGTCTAGTGCCAGATAATTATG
TTCAAGTAGCTGGGAAGACCTTCGGACAGTTGGCTCAGGATGAACTACTGAAATATGGAGAACAGTGGAAAGATGTAACT
CTCACAGATGGTAAGGATACAATTTACAATCCAACAAAGGCTAAATCTGCATTTGAAAAAGCGAAGTCAGAATTGCAAGC
TAAGGGAGTGAGTTTCCCGATTCATTTGGATGTGCCTGTTGAGCAAACTGATGTAGTTGCGGTTCAACAAACCAATTCGC
TAAAACAATCAATTGAAGAAACGCTTGGAACGGAGAATGTAATTATAGATGTTCTTCAAATGACAGATAATGAGAAGGAA
AGTATTACTTCTCAAGCTAAAGTTCCAACCCAAAAAGATTATGATTTGAACGGAACAGGTTGGGGACCAGATTACCAAGA
TCCAGCAACCTATCTCAATATTTTAGATGCTAAGAAGGGTTCTGCCTTGAAACATCTAGGTATAACAAAGGGCAAGGATC
CTGAAGTTGTGGCGAAAGTTGGCTTGGATGAATACAAGAAGCTCTTGGATGATGCGGCTTCTGAGACAAGTAATCTTGAT
AAACGATACGAAAAGTATGCCAAAGCACAGGCTTGGGTTACTGATAGTTCACTTCTTATTCCAGTTGCTTCTTCAGGGGG
CTCTCCTATGGTTAGTCGTACTGTTCCATTTACCAAAGCTTATTCACAGGTCGGTATTAAGGGGGATCCATTTATTTTTA
AAGGAATGGAACTTCAAAATGATATTGTGACAACTAAAGAGTATGATGCAGCCTTCAAAAAGTGGCAAAAGGAAAAACTG
GAATCGAATGCTCAGTATCAAAAGGATTTAGAAAAGCACATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.495

100

0.537
  amiA3 Streptococcus thermophilus LMD-9

53.111

100

0.534
  amiA3 Streptococcus thermophilus LMG 18311

52.656

100

0.53

Multiple sequence alignment