Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SP4011_RS09725 Genome accession   NZ_AP026968
Coordinates   1953574..1955553 (-) Length   659 a.a.
NCBI ID   WP_338619101.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948574..1960553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS09705 (SP4011_18750) gpsB 1949644..1949985 (-) 342 WP_000146532.1 cell division regulator GpsB -
  SP4011_RS09710 (SP4011_18760) - 1950055..1950582 (-) 528 WP_050216108.1 DUF1273 domain-containing protein -
  SP4011_RS09715 (SP4011_18770) recU 1950649..1951245 (+) 597 WP_000248774.1 Holliday junction resolvase RecU -
  SP4011_RS09720 (SP4011_18780) pbp1a 1951242..1953407 (+) 2166 WP_050278990.1 penicillin-binding protein PBP1A -
  SP4011_RS09725 (SP4011_18790) amiA3 1953574..1955553 (-) 1980 WP_338619101.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS09730 (SP4011_18800) glf 1955789..1956889 (-) 1101 WP_338619102.1 UDP-galactopyranose mutase -
  SP4011_RS09735 (SP4011_18810) amiA3 1957073..1959031 (-) 1959 WP_338619103.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72715.39 Da        Isoelectric Point: 4.7929

>NTDB_id=99136 SP4011_RS09725 WP_338619101.1 1953574..1955553(-) (amiA3) [Streptococcus parapneumoniae strain SP4011]
MKTRKVLALAGVTLLAAGVLAACSGGSGAQGEKTFAFTYETHPDNLNYLTTGKAATSEITSNVIDGLLENDKYGNLIPSL
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKAEALYLVQDSIKGLDAYAKGEITDFAQVGI
KALDDQTVQYTLNKPETFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSTTYLVGTNIDRQSYKHTSKT
SEEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGETGASKILRNLFVPPTFVQADGKNFGDIVKEKLVTYGDEWRDVN
LADSQDGLYNPEKAKAEFAKAKSALQAEGVTFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVVIDIQQLQKDELL
NVTLFAENAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSKTGRPILSKMVPFTIPFALSGNKGTSDPVLYKYLELQDKAVTADEYQKAQEKWM
KEKAESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=99136 SP4011_RS09725 WP_338619101.1 1953574..1955553(-) (amiA3) [Streptococcus parapneumoniae strain SP4011]
ATGAAAACGAGAAAAGTATTAGCTCTTGCGGGAGTAACCTTATTAGCAGCTGGTGTTTTGGCTGCTTGTTCTGGGGGTTC
AGGCGCTCAAGGTGAAAAAACCTTTGCATTTACCTACGAGACACATCCGGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCAACTTCTGAGATTACTAGTAATGTGATCGATGGATTACTTGAAAATGATAAATACGGGAACCTTATTCCCTCATTG
GCAGAAGACTGGTCGGTTTCTAAGGATGGCTTGACTTATACTTATAAGATTCGTCAGGATGCCAAGTGGTATACATCTGA
GGGAGAAGAGTACGCTCCTGTTAAGGCTCAGGACTTTGTAACAGGACTTAAATATGCAACAGATAAGAAAGCAGAAGCCC
TTTACTTGGTACAGGATTCAATCAAAGGTCTGGATGCCTATGCCAAAGGTGAAATCACAGACTTTGCTCAAGTCGGGATT
AAAGCCCTTGACGATCAGACAGTCCAATACACCTTGAACAAACCTGAAACTTTTTGGAATTCTAAAACAACCATGGGTGT
GCTTGCGCCAGTCAATGAAGAGTTTTTGAATTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCTTGT
ATAACGGCCCTTATTTGTTGAAATCCATTGTAACTAAATCCTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGATAAG
GACAATGTGCATATTGACAAGGTCAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCTCGTCTCTATCCAACAAGTGCAAGCTTCGCAGAGCTCGAGAAGAGTATGAAAGACAATATTG
TCTATACTCAACAAGACTCTACGACTTATCTAGTAGGGACAAATATTGACCGTCAATCTTATAAGCACACATCTAAGACC
AGCGAAGAACAAAAGACATCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGACCG
TACAGCCTATGCCTCTCAGTTGAATGGAGAAACTGGAGCAAGCAAAATCTTGCGTAATCTCTTTGTGCCACCAACATTTG
TTCAAGCAGATGGGAAAAACTTTGGCGATATAGTCAAAGAGAAATTAGTGACTTATGGGGATGAATGGAGGGATGTTAAT
CTGGCCGATTCACAAGATGGTCTCTACAATCCAGAAAAAGCCAAGGCTGAATTTGCTAAAGCTAAATCAGCTTTGCAGGC
AGAAGGTGTGACTTTCCCAATTCATTTGGATATGCCAGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGAACTGATAATGTCGTTATTGATATCCAACAATTGCAAAAAGATGAATTGCTT
AATGTAACTCTATTTGCCGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATTATCAAACCATCTGTAGGAGAAAGCACTAAAACATATTTAGGATTTGACTCAGGGG
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAAGCTGGTGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCAGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTGACC
CAGTCTTGTATAAATACCTTGAACTTCAAGACAAGGCAGTTACTGCAGATGAATATCAAAAAGCTCAAGAAAAATGGATG
AAAGAAAAAGCAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.333

100

0.584
  amiA Streptococcus salivarius strain HSISS4

58.333

100

0.584
  amiA3 Streptococcus thermophilus LMG 18311

57.879

100

0.58

Multiple sequence alignment