Detailed information
Bioinformatically predicted
Overview
| Name | comW | Type | Regulator |
| Locus tag | SP4011_RS00225 | Genome accession | NZ_AP026968 |
| Coordinates | 37129..37365 (+) | Length | 78 a.a. |
| NCBI ID | WP_338619413.1 | Uniprot ID | - |
| Organism | Streptococcus parapneumoniae strain SP4011 | ||
| Function | stabilization and activation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 32129..42365
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SP4011_RS00205 | tnpA | 34642..34857 (+) | 216 | Protein_34 | IS200/IS605 family transposase | - |
| SP4011_RS00210 | - | 34865..35215 (-) | 351 | Protein_35 | helix-turn-helix domain-containing protein | - |
| SP4011_RS11405 | - | 35151..35390 (+) | 240 | WP_419992023.1 | transposase | - |
| SP4011_RS00220 (SP4011_00370) | - | 35633..36700 (-) | 1068 | Protein_37 | transposase | - |
| SP4011_RS00225 (SP4011_00380) | comW | 37129..37365 (+) | 237 | WP_338619413.1 | sigma(X)-activator ComW | Regulator |
| SP4011_RS00230 (SP4011_00390) | - | 37596..38882 (+) | 1287 | WP_338620376.1 | adenylosuccinate synthase | - |
| SP4011_RS00235 (SP4011_00400) | tadA | 39082..39549 (+) | 468 | WP_338619414.1 | tRNA adenosine(34) deaminase TadA | - |
| SP4011_RS00245 (SP4011_00410) | - | 39736..40179 (+) | 444 | WP_338619416.1 | dUTP diphosphatase | - |
| SP4011_RS00250 (SP4011_00420) | - | 40139..40696 (+) | 558 | WP_338619418.1 | histidine phosphatase family protein | - |
| SP4011_RS00255 (SP4011_00430) | radA | 40710..42071 (+) | 1362 | WP_419992027.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 78 a.a. Molecular weight: 9819.34 Da Isoelectric Point: 7.2369
>NTDB_id=99073 SP4011_RS00225 WP_338619413.1 37129..37365(+) (comW) [Streptococcus parapneumoniae strain SP4011]
MLQKIYEQMADFYRNIEEEYGTVFGDNFDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKIIMNRGFISC
MLQKIYEQMADFYRNIEEEYGTVFGDNFDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKIIMNRGFISC
Nucleotide
Download Length: 237 bp
>NTDB_id=99073 SP4011_RS00225 WP_338619413.1 37129..37365(+) (comW) [Streptococcus parapneumoniae strain SP4011]
ATGCTACAAAAAATTTATGAGCAGATGGCGGATTTTTATAGAAATATTGAAGAAGAGTATGGTACTGTATTTGGTGATAA
TTTTGATTGGGAACATTTCCATTTTAAATTTTTGATTTATTATTTAGTGAGATATGGTATTGGGTGTCGTAGGGATTTTA
TCGTTTATCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAGATAATAATGAATCGGGGATTTATTTCGTGTTGA
ATGCTACAAAAAATTTATGAGCAGATGGCGGATTTTTATAGAAATATTGAAGAAGAGTATGGTACTGTATTTGGTGATAA
TTTTGATTGGGAACATTTCCATTTTAAATTTTTGATTTATTATTTAGTGAGATATGGTATTGGGTGTCGTAGGGATTTTA
TCGTTTATCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAGATAATAATGAATCGGGGATTTATTTCGTGTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comW | Streptococcus pneumoniae Rx1 |
88.462 |
100 |
0.885 |
| comW | Streptococcus pneumoniae D39 |
88.462 |
100 |
0.885 |
| comW | Streptococcus pneumoniae R6 |
88.462 |
100 |
0.885 |
| comW | Streptococcus pneumoniae TIGR4 |
88.462 |
100 |
0.885 |
| comW | Streptococcus mitis SK321 |
79.487 |
100 |
0.795 |
| comW | Streptococcus mitis NCTC 12261 |
79.221 |
98.718 |
0.782 |