Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SP4011_RS00255 Genome accession   NZ_AP026968
Coordinates   40710..42071 (+) Length   453 a.a.
NCBI ID   WP_419992027.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35710..47071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS00225 (SP4011_00380) comW 37129..37365 (+) 237 WP_338619413.1 sigma(X)-activator ComW Regulator
  SP4011_RS00230 (SP4011_00390) - 37596..38882 (+) 1287 WP_338620376.1 adenylosuccinate synthase -
  SP4011_RS00235 (SP4011_00400) tadA 39082..39549 (+) 468 WP_338619414.1 tRNA adenosine(34) deaminase TadA -
  SP4011_RS00245 (SP4011_00410) - 39736..40179 (+) 444 WP_338619416.1 dUTP diphosphatase -
  SP4011_RS00250 (SP4011_00420) - 40139..40696 (+) 558 WP_338619418.1 histidine phosphatase family protein -
  SP4011_RS00255 (SP4011_00430) radA 40710..42071 (+) 1362 WP_419992027.1 DNA repair protein RadA Machinery gene
  SP4011_RS00260 (SP4011_00440) - 42142..42837 (+) 696 WP_000672726.1 TIGR00266 family protein -
  SP4011_RS00265 (SP4011_00450) - 42997..43494 (+) 498 WP_338619419.1 carbonic anhydrase -
  SP4011_RS00270 (SP4011_00460) - 43519..44334 (+) 816 WP_338619420.1 PrsW family intramembrane metalloprotease -
  SP4011_RS00275 (SP4011_00470) - 44480..45448 (+) 969 WP_338619421.1 ribose-phosphate diphosphokinase -
  SP4011_RS00280 (SP4011_00480) - 45567..46529 (+) 963 WP_338619422.1 Rpn family recombination-promoting nuclease/putative transposase -
  SP4011_RS00285 - 46530..46895 (+) 366 Protein_49 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49473.01 Da        Isoelectric Point: 6.5137

>NTDB_id=99074 SP4011_RS00255 WP_419992027.1 40710..42071(+) (radA) [Streptococcus parapneumoniae strain SP4011]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGIVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRVEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=99074 SP4011_RS00255 WP_419992027.1 40710..42071(+) (radA) [Streptococcus parapneumoniae strain SP4011]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGCGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACGTCAATCAACGTCAATCGAACCAAGACAGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGAGTGGTACCGGGAAGTCTTGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACCCTTCTTTTACA
AGTTTCAACCCAGCTGTCTCAAGTGGGGATAGTTCTCTATGTCAGTGGGGAGGAGTCTGCTCAGCAGATTAAACTACGTG
CAGAGCGTTTGGGTGATATTGATAGCGAGTTTTATCTCTATGCAGAGACTAATATGCAGAGTGTTCGCGTAGAGGTAGAG
AGAATCCAGCCAGACTTCCTCATTATTGACTCCATTCAGACTATTATGTCTCCTGAGATTTCAGGGGTACAGGGATCTGT
TTCTCAAGTGCGTGAGGTGACAGCTGAACTTATGCAGCTGGCCAAAACCAATAACATTGCCATCTTTATCGTAGGGCATG
TGACCAAGGAAGGAACCTTAGCTGGTCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCATACCTTCCGTATTCTGAGAGCGGTCAAAAACCGTTTTGGTTCAACAAATGAGATTGGAATTTTTGAGATGCAGTC
AGGTGGCTTGGTTGAGGTCCTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGAGCGACTGGTTCGTCAATCG
TTGTGACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAATCGTGCGAGTCTGATTATGGCTGTTTTAGAAAAGCGTGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGCGGTGTCAAATTGGATGAACCTGCGATAGACTTGGCCGTTGCGGTTGCTA
TTGCTTCGAGCTACAAGGACAAGCCAACCAACCCTCAGGAATGTTTTGTGGGAGAACTTGGTTTGACGGGAGAAATTCGC
CGTGTCAATCGTATCGAGCAACGCATCAATGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCCACCTAAGGAAATTCAGGTTATTGGGGTGACAACGATTCAGGAAGTCTTGAAAAAGGTATTCTCCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.338

100

0.993
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Streptococcus pneumoniae Rx1

99.117

100

0.991
  radA Streptococcus pneumoniae D39

99.117

100

0.991
  radA Streptococcus pneumoniae R6

99.117

100

0.991
  radA Streptococcus pneumoniae TIGR4

99.117

100

0.991
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment