Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHX85_RS24355 Genome accession   NZ_CP153194
Coordinates   5069354..5070874 (+) Length   506 a.a.
NCBI ID   WP_374014424.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-072     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5064354..5075874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHX85_RS24330 (AAHX85_24275) ilvE 5065914..5066843 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  AAHX85_RS24335 (AAHX85_24280) ilvM 5066860..5067117 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AAHX85_RS24340 (AAHX85_24285) ilvG 5067114..5068760 (-) 1647 WP_023291544.1 acetolactate synthase 2 catalytic subunit -
  AAHX85_RS24345 ilvX 5068763..5068816 (-) 54 WP_201281575.1 peptide IlvX -
  AAHX85_RS24350 (AAHX85_24290) ilvL 5068901..5068999 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHX85_RS24355 (AAHX85_24295) comM 5069354..5070874 (+) 1521 WP_374014424.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHX85_RS24360 (AAHX85_24300) - 5070899..5071237 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHX85_RS24365 (AAHX85_24305) hdfR 5071356..5072177 (+) 822 WP_032454492.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55171.58 Da        Isoelectric Point: 8.4902

>NTDB_id=990526 AAHX85_RS24355 WP_374014424.1 5069354..5070874(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-072]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNHYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSADNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPIVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLLPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=990526 AAHX85_RS24355 WP_374014424.1 5069354..5070874(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-072]
ATGTCGCTCGCCATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACTACCGTGAAAGAGGCCCGTGACCGGGTCCGTAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCCAAGAAAATAACCATTAACCTGGCGCCTGCGGATCTACCTAAAGAGGGTGGACGA
TACGATCTGCCTATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAATACGACGCGACTGAATCACTATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGTATCGTCGTCTCCGCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGCGCTTTTCTCGCGGGGCAGACATCGCTTTCACCGCCTCTTGCCGAGGCACCCATTGTTGATGAACGCGG
CGAAGATTTGCGCGATGTTATCGGCCAGCAGCAGGGAAAACGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACCGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCGCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCAATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAACTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCTGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGGCAAAATAAGCTCAATGCTCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGT
TGGGACTCTCTATTCGAGCCTGGCAGCGGCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-387)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.47

100

0.611
  comM Glaesserella parasuis strain SC1401

60.118

100

0.605
  comM Vibrio campbellii strain DS40M4

59.921

99.605

0.597
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment