Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHY18_RS24715 Genome accession   NZ_CP153019
Coordinates   5140120..5141640 (+) Length   506 a.a.
NCBI ID   WP_348849509.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-262     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5135120..5146640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHY18_RS24690 (AAHY18_24625) ilvE 5136680..5137609 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  AAHY18_RS24695 (AAHY18_24630) ilvM 5137626..5137883 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AAHY18_RS24700 (AAHY18_24635) ilvG 5137880..5139526 (-) 1647 WP_049013138.1 acetolactate synthase 2 catalytic subunit -
  AAHY18_RS24705 ilvX 5139529..5139582 (-) 54 WP_201281575.1 peptide IlvX -
  AAHY18_RS24710 (AAHY18_24640) ilvL 5139667..5139765 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHY18_RS24715 (AAHY18_24645) comM 5140120..5141640 (+) 1521 WP_348849509.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHY18_RS24720 (AAHY18_24650) - 5141665..5142003 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHY18_RS24725 (AAHY18_24655) hdfR 5142122..5142943 (+) 822 WP_023291542.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55171.60 Da        Isoelectric Point: 8.3669

>NTDB_id=990247 AAHY18_RS24715 WP_348849509.1 5140120..5141640(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-262]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINCGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNHYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSADNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPIVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=990247 AAHY18_RS24715 WP_348849509.1 5140120..5141640(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-262]
ATGTCGCTCGCCATCGTCTATACTCGCGCGGCGCTTGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACTACCGTGAAAGAGGCCCGTGACCGGGTCCGTAGCGCCCTGA
TCAACTGCGGCTACGCTTTCCCTGCCAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTACCTAAAGAGGGCGGACGA
TACGATCTGCCTATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAATACGACGCGACTGAATCACTATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGTATCGTCGTCTCCGCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGCGCTTTTCTCGCGGGGCAGACATCGCTTTCACCGCCTCTTGCCGAGGCACCTATTGTTGATGAACGCGG
CGAAGATTTGCGCGATGTTATCGGCCAGCAGCAGGGAAAACGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACCGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCGCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGTTCAATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCTGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGGCAAAATAAGCTCAATGCTCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGT
TGGGGCTCTCTATTCGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Vibrio cholerae strain A1552

59.642

99.407

0.593
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment