Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHW31_RS26275 Genome accession   NZ_CP152915
Coordinates   5439822..5441342 (+) Length   506 a.a.
NCBI ID   WP_039102698.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain NK_H12_100     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5434822..5446342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHW31_RS26250 (AAHW31_26200) - 5436379..5437308 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHW31_RS26255 (AAHW31_26205) ilvM 5437328..5437585 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  AAHW31_RS26260 (AAHW31_26210) ilvG 5437582..5439228 (-) 1647 WP_039102699.1 acetolactate synthase 2 catalytic subunit -
  AAHW31_RS26265 ilvX 5439231..5439284 (-) 54 WP_201281575.1 peptide IlvX -
  AAHW31_RS26270 (AAHW31_26215) ilvL 5439369..5439467 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHW31_RS26275 (AAHW31_26220) comM 5439822..5441342 (+) 1521 WP_039102698.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHW31_RS26280 (AAHW31_26225) - 5441367..5441705 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHW31_RS26285 (AAHW31_26230) hdfR 5441824..5442645 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55129.53 Da        Isoelectric Point: 8.0283

>NTDB_id=990106 AAHW31_RS26275 WP_039102698.1 5439822..5441342(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H12_100]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADEPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=990106 AAHW31_RS26275 WP_039102698.1 5439822..5441342(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H12_100]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGAGCCCGCCGTTGATGAACGCTG
TGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAACCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTAGGCGGAGGCTCAATACCTGTCCCCGGCGAGATTTCACTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCAGAGTTTGAACGACGGGTGCTGGACGCGCTGCGTGAACCCATTGAGTCA
GGCAAGATCCACATATCACGATCGCGCGCCAAGATTGACTATCCGGCGCGTTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCTACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGGCGCCTGTCCGGCC
CTTTTCTCGACCGCTTCGATCTTTCTTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAATCGAGTGCGACGGTCCGTCAGCGTGTGCTGGCGGCACGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGCCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGC
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment