Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHW32_RS25975 Genome accession   NZ_CP152911
Coordinates   5324218..5325738 (+) Length   506 a.a.
NCBI ID   WP_032454493.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain NK_H13_003     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5319218..5330738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHW32_RS25950 (AAHW32_25905) ilvE 5320778..5321707 (-) 930 WP_374416831.1 branched-chain-amino-acid transaminase -
  AAHW32_RS25955 (AAHW32_25910) ilvM 5321724..5321981 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AAHW32_RS25960 (AAHW32_25915) ilvG 5321978..5323624 (-) 1647 WP_049013138.1 acetolactate synthase 2 catalytic subunit -
  AAHW32_RS25965 ilvX 5323627..5323680 (-) 54 WP_201281575.1 peptide IlvX -
  AAHW32_RS25970 (AAHW32_25920) ilvL 5323765..5323863 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHW32_RS25975 (AAHW32_25925) comM 5324218..5325738 (+) 1521 WP_032454493.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHW32_RS25980 (AAHW32_25930) - 5325764..5326102 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHW32_RS25985 (AAHW32_25935) hdfR 5326221..5327042 (+) 822 WP_060591418.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55155.54 Da        Isoelectric Point: 8.4902

>NTDB_id=990083 AAHW32_RS25975 WP_032454493.1 5324218..5325738(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain NK_H13_003]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNHYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSADNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPIVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=990083 AAHW32_RS25975 WP_032454493.1 5324218..5325738(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain NK_H13_003]
ATGTCGCTCGCCATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACGACCGTGAAAGAGGCCCGTGACCGGGTCCGTAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGACGA
TACGATCTGCCTATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAATACGACGCGACTGAATCACTATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGTATCGTCGTCTCCGCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGCGCTTTTCTCGCGGGGCAGACATCGCTTTCACCGCCTCTTGCCGAGGCACCTATTGTTGATGAACGCGG
CGAAGATTTGCGCGATGTTATCGGCCAGCAGCAGGGAAAACGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACCGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCGCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGTTCAATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCTGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGGCAAAATAAGCTCAATGCTCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGT
TGGGGCTCTCTATTCGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTTGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment