Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHW42_RS24365 Genome accession   NZ_CP152879
Coordinates   5020329..5021849 (+) Length   506 a.a.
NCBI ID   WP_374245264.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_058     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5015329..5026849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHW42_RS24340 (AAHW42_24275) ilvE 5016889..5017818 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  AAHW42_RS24345 (AAHW42_24280) ilvM 5017835..5018092 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AAHW42_RS24350 (AAHW42_24285) ilvG 5018089..5019735 (-) 1647 WP_323109448.1 acetolactate synthase 2 catalytic subunit -
  AAHW42_RS24355 ilvX 5019738..5019791 (-) 54 WP_201281575.1 peptide IlvX -
  AAHW42_RS24360 (AAHW42_24290) ilvL 5019876..5019974 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHW42_RS24365 (AAHW42_24295) comM 5020329..5021849 (+) 1521 WP_374245264.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHW42_RS24370 (AAHW42_24300) - 5021874..5022212 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHW42_RS24375 (AAHW42_24305) hdfR 5022331..5023152 (+) 822 WP_004886879.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55138.42 Da        Isoelectric Point: 8.4873

>NTDB_id=989989 AAHW42_RS24365 WP_374245264.1 5020329..5021849(+) (comM) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_058]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPTVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLTGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989989 AAHW42_RS24365 WP_374245264.1 5020329..5021849(+) (comM) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_058]
ATGTCGCTCGCCATCGTCTATACCCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACCACCGTGAAAGAGGCCCGTGACCGGGTTCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGCGA
TACGATCTACCTATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATCGTCGTCTCCTCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGTGCTTTTCTCGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCACCCACCGTTGATGAACGCGG
CGAAGATCTGCGCGATGTTATCGGCCAGCAGCAGGGCAAGCGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGACCGGCCCACCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCCCTGGAGAGCACGGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCACCTCATCATAGCGCTTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCATATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGACAACGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGACAAAATAAGCTCAATGCCCA
CCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTCTCTATACGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.47

100

0.611
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.618

100

0.451

Multiple sequence alignment