Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHW62_RS24810 Genome accession   NZ_CP152815
Coordinates   5089234..5090754 (+) Length   506 a.a.
NCBI ID   WP_008807983.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain NK_H17_002     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5084234..5095754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHW62_RS24785 (AAHW62_24725) - 5085791..5086720 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHW62_RS24790 (AAHW62_24730) ilvM 5086740..5086997 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  AAHW62_RS24795 (AAHW62_24735) ilvG 5086994..5088640 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHW62_RS24800 ilvX 5088643..5088696 (-) 54 WP_201281575.1 peptide IlvX -
  AAHW62_RS24805 (AAHW62_24740) ilvL 5088781..5088879 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHW62_RS24810 (AAHW62_24745) comM 5089234..5090754 (+) 1521 WP_008807983.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHW62_RS24815 (AAHW62_24750) - 5090779..5091117 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHW62_RS24820 (AAHW62_24755) hdfR 5091236..5092057 (+) 822 WP_022065289.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55073.51 Da        Isoelectric Point: 8.2651

>NTDB_id=989875 AAHW62_RS24810 WP_008807983.1 5089234..5090754(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H17_002]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVAAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989875 AAHW62_RS24810 WP_008807983.1 5089234..5090754(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H17_002]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCAGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCTTTGA
TTAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCTGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCTGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGCAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGTGGCCGCCGTTGATGAACGCTG
CGAAGATCTGCGAGATGTTATCGGCCAGCAACAGGGCAAACGGGCACTGGAGATTGTGGCTGCCGGTGGCCACAACCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACTCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTAGGCGGAGGCTCAATACCTGTCCCCGGCGAGATTTCACTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCAGAGTTTGAACGACGGGTGCTGGACGCGCTGCGTGAACCCATTGAGTCA
GGCAAGATCCACATATCACGATCGCGCGCCAAGATTGACTATCCGGCGCGTTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCTACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGGCGCCTGTCCGGCC
CTTTTCTCGACCGCTTCGATCTTTCTTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAATCGAGTGCGACGGTCCGTCAGCGTGTGCTGGCGGCACGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGCCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGT
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.883

100

0.605
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

58.893

100

0.589
  comM Vibrio campbellii strain DS40M4

58.218

99.802

0.581
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment