Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHW99_RS26100 Genome accession   NZ_CP152721
Coordinates   5365639..5367159 (+) Length   506 a.a.
NCBI ID   WP_374183030.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain NK_H21_067     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5360639..5372159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHW99_RS26075 (AAHW99_26025) - 5362196..5363125 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHW99_RS26080 (AAHW99_26030) ilvM 5363145..5363402 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  AAHW99_RS26085 (AAHW99_26035) ilvG 5363399..5365045 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHW99_RS26090 ilvX 5365048..5365101 (-) 54 WP_201281575.1 peptide IlvX -
  AAHW99_RS26095 (AAHW99_26040) ilvL 5365186..5365284 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHW99_RS26100 (AAHW99_26045) comM 5365639..5367159 (+) 1521 WP_374183030.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHW99_RS26105 (AAHW99_26050) - 5367184..5367522 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHW99_RS26110 (AAHW99_26055) hdfR 5367641..5368462 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55058.48 Da        Isoelectric Point: 8.6153

>NTDB_id=989781 AAHW99_RS26100 WP_374183030.1 5365639..5367159(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H21_067]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGIRGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQDDAVWLEQTLTHLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989781 AAHW99_RS26100 WP_374183030.1 5365639..5367159(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H21_067]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCGGGGCAAGCATCTCTTTCACCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGCTG
CGAAGATCTGCGAGATGTTATCGGCCAGCAACAGGGCAAACGGGCACTGGAGATTGTGGCGGCCGGTGGCCACAATCTGC
TCCTGATTGGCCCACCAGGCACCGGCAAAACCATGCTTGCCAGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCACACCGCAAAGACCCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGTGGCTCAATACCTGCCCCAGGCGAGATTTCACTGGCCC
ATAATGGCGTCCTATTTCTTGATGAGCTACCGGAGTTTGAGCGGCGGGTGCTGGATGCGCTACGTGAGCCCATTGAGTCA
GGCAAGATCCACATATCGCGATCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCAGCAATGAACCCAAG
CCCGACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGACGCCTGTCTGGCC
CTTTTCTCGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCACCGCCGGGGATACTGAGCCAGGGCATACGAGGTGAA
GAATCGAGTGCGACAGTCCGTCAGCGTGTGCTGGCAGCGCGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTGCGGCAGGATGATGCTGTCTGGCTGGAACAGACGCTAACTCACC
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAAGTGGCAAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTTAGCTATCGGGCAATAGATCGGATGCTTAGCCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.547

100

0.613
  comM Glaesserella parasuis strain SC1401

59.649

100

0.605
  comM Vibrio cholerae strain A1552

59.443

99.407

0.591
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Legionella pneumophila str. Paris

48.893

98.221

0.48
  comM Legionella pneumophila strain ERS1305867

48.893

98.221

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

100

0.447

Multiple sequence alignment