Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHX02_RS25755 Genome accession   NZ_CP152713
Coordinates   5301466..5302986 (+) Length   506 a.a.
NCBI ID   WP_374092817.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain NK_H21_080     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5296466..5307986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHX02_RS25730 (AAHX02_25685) - 5298023..5298952 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHX02_RS25735 (AAHX02_25690) ilvM 5298972..5299229 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  AAHX02_RS25740 (AAHX02_25695) ilvG 5299226..5300872 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHX02_RS25745 ilvX 5300875..5300928 (-) 54 WP_201281575.1 peptide IlvX -
  AAHX02_RS25750 (AAHX02_25700) ilvL 5301013..5301111 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHX02_RS25755 (AAHX02_25705) comM 5301466..5302986 (+) 1521 WP_374092817.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHX02_RS25760 (AAHX02_25710) - 5303011..5303349 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHX02_RS25765 (AAHX02_25715) hdfR 5303468..5304289 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55105.51 Da        Isoelectric Point: 8.2651

>NTDB_id=989758 AAHX02_RS25755 WP_374092817.1 5301466..5302986(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H21_080]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFFDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989758 AAHX02_RS25755 WP_374092817.1 5301466..5302986(+) (comM) [Klebsiella variicola subsp. variicola strain NK_H21_080]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGCTG
TGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAACCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGTGGCTCAATACCTGCCCCAGGCGAGATTTCACTGGCCC
ATAATGGCGTCCTATTTCTTGATGAGCTACCGGAGTTTGAGCGGCGGGTGCTGGATGCGCTACGTGAGCCCATTGAGTCA
GGCAAGATCCACATATCGCGATCGCGCGCCAAGATTGACTATCCGGCGCGTTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCTACCGGGCATTATCAGGGCAAACATAATCGTGCGTCGCCTGAGCAGACATTGCGCTACCTTGGGCGCCTGTCCGGCC
CTTTTTTCGACCGCTTCGATCTTTCTTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAATCGAGTGCGACGGTCCGTCAGCGTGTGCTGGCGGCACGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGCCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGT
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.687

100

0.603
  comM Glaesserella parasuis strain SC1401

59.57

100

0.603
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.296

98.221

0.484
  comM Legionella pneumophila strain ERS1305867

49.296

98.221

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

100

0.447

Multiple sequence alignment