Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHH94_RS00765 Genome accession   NZ_CP152488
Coordinates   168397..169917 (-) Length   506 a.a.
NCBI ID   WP_032615213.1    Uniprot ID   A0A7H0FCU4
Organism   Leclercia adecarboxylata strain WWCOL-134     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 163397..174917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH94_RS00755 (AAHH94_00755) hdfR 167093..167914 (-) 822 WP_032615217.1 HTH-type transcriptional regulator HdfR -
  AAHH94_RS00760 (AAHH94_00760) - 168033..168371 (+) 339 WP_032615215.1 DUF413 domain-containing protein -
  AAHH94_RS00765 (AAHH94_00765) comM 168397..169917 (-) 1521 WP_032615213.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHH94_RS00770 (AAHH94_00770) ilvL 170259..170357 (+) 99 WP_023620831.1 ilv operon leader peptide -
  AAHH94_RS00775 (AAHH94_00775) ilvX 170444..170494 (+) 51 WP_196221615.1 peptide IlvX -
  AAHH94_RS00780 (AAHH94_00780) ilvG 170497..172143 (+) 1647 WP_032615211.1 acetolactate synthase 2 catalytic subunit -
  AAHH94_RS00785 (AAHH94_00785) ilvM 172140..172409 (+) 270 WP_032615208.1 acetolactate synthase 2 small subunit -
  AAHH94_RS00790 (AAHH94_00790) ilvE 172426..173355 (+) 930 WP_032615204.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55301.58 Da        Isoelectric Point: 8.6016

>NTDB_id=989673 AAHH94_RS00765 WP_032615213.1 168397..169917(-) (comM) [Leclercia adecarboxylata strain WWCOL-134]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSCSRLSTYEFVGELALTGALRGVPGAISGALAAIQAGREIIVANDNAAEVSLIEQKGCLVAGHL
QEVCAFLEGRHELAAPVQEPFAIEKSDRDIRDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLDGLLPPLSNH
EALESAAILSLVNASSMYKQWRQRPFRAPHHSASLVAMVGGGAIPVPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQTHTRG
ESSITVRNRVIAAQERQRVRQHKLNAHLDNAGIRRYCSLAAEDAQWLEETLTRFGLSVRAWQRLLKVARTIADLEESEQI
ERRHLQEALSYRAIDRLLLHLQKMLR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989673 AAHH94_RS00765 WP_032615213.1 168397..169917(-) (comM) [Leclercia adecarboxylata strain WWCOL-134]
ATGTCACTGTCGGTTGTTTATACCCGCGCTGCGTTAGGCGTCAAAGCGCCGCTGATTTCCGTTGAGGTTCACCTCAGTAA
TGGCCTGCCGGGCTTAACCCTGGTCGGCCTGCCAGAAACCACCGTCAAGGAAGCCAGAGACCGGGTACGCAGCGCAATCA
TCAATAGCGGTTATACCTTTCCGGCCAAAAAGATCACCATCAACCTGGCGCCTGCCGATTTACCCAAGGAAGGCGGGCGA
TATGATTTACCTATCGCCATTGCGCTTCTCGCTGCCTCTGAGCAGCTCTCCTGTTCCAGACTGAGCACATACGAGTTCGT
GGGTGAGCTGGCGCTTACAGGCGCATTAAGAGGGGTTCCCGGCGCAATATCGGGTGCCCTGGCGGCCATTCAGGCTGGCA
GAGAGATTATTGTCGCCAATGATAATGCTGCCGAAGTTAGCCTTATTGAACAAAAAGGCTGTCTGGTGGCCGGGCATTTG
CAGGAGGTATGCGCCTTTCTTGAAGGCCGACACGAGCTGGCTGCGCCCGTTCAGGAGCCATTCGCAATAGAAAAGAGCGA
CCGGGACATCAGAGATATCATCGGTCAGGAACAAGGTAAACGGGCGCTGGAGATCACTGCTGCTGGCGCGCACAATCTGC
TGCTGATTGGCCCCCCTGGTACCGGTAAAACCATGCTCGCGAGCCGACTTGATGGCCTTCTCCCGCCACTCAGCAACCAT
GAAGCGCTGGAGAGTGCGGCAATCCTGAGTCTGGTTAACGCCTCATCGATGTATAAGCAGTGGCGTCAGCGCCCTTTTCG
CGCACCGCACCACAGCGCCTCGCTCGTGGCCATGGTGGGCGGGGGCGCGATTCCCGTGCCGGGTGAGATCTCGCTGGCGC
ATAACGGCATTCTCTTTCTGGACGAGTTACCTGAGTTTGAAAGACGTGTACTGGATGCCTTACGCGAGCCTATCGAATCC
GGGCAGATAAATATCTCCCGCACCCGCGCAAAGATCAGTTATCCCGCTCGCTTTCAGCTTATCGCCGCCATGAATCCCAG
CCCAACGGGGCACTATCAAGGCAACCATAATCGCTGTTCGCCAGAGCAGACGCTTCGCTATCTGGGACGCTTATCGGGGC
CATTTCTGGATCGCTTCGATTTATCGCTTGAGATCCCGCTACCGCCGCCAGGGTTATTAAGCCAGACGCATACCAGAGGA
GAATCCAGCATCACCGTGCGAAACAGAGTAATTGCTGCGCAGGAGCGACAGCGGGTACGACAACATAAACTCAATGCTCA
CCTGGATAATGCGGGGATACGCAGGTATTGCTCACTTGCGGCAGAAGATGCCCAGTGGCTGGAAGAGACCCTTACTCGGT
TTGGCCTGTCGGTGCGTGCCTGGCAGCGGCTGTTGAAGGTGGCACGTACAATTGCCGATCTGGAAGAGAGTGAACAGATT
GAACGCAGGCACCTGCAGGAAGCCCTGAGCTATCGCGCTATCGATCGCTTGCTGCTGCACCTGCAAAAGATGCTGAGATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H0FCU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.613
  comM Glaesserella parasuis strain SC1401

60.158

100

0.603
  comM Vibrio campbellii strain DS40M4

59.245

99.407

0.589
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.27

100

0.427

Multiple sequence alignment