Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHB66_RS22890 Genome accession   NZ_CP152474
Coordinates   4761156..4762676 (+) Length   506 a.a.
NCBI ID   WP_347114692.1    Uniprot ID   -
Organism   Leclercia sp. S52     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4756156..4767676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHB66_RS22865 (AAHB66_22865) ilvE 4757715..4758644 (-) 930 WP_142487539.1 branched-chain-amino-acid transaminase -
  AAHB66_RS22870 (AAHB66_22870) ilvM 4758662..4758931 (-) 270 WP_032615208.1 acetolactate synthase 2 small subunit -
  AAHB66_RS22875 (AAHB66_22875) ilvG 4758928..4760574 (-) 1647 WP_347114691.1 acetolactate synthase 2 catalytic subunit -
  AAHB66_RS22880 (AAHB66_22880) ilvX 4760577..4760627 (-) 51 WP_196221615.1 peptide IlvX -
  AAHB66_RS22885 (AAHB66_22885) ilvL 4760714..4760812 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHB66_RS22890 (AAHB66_22890) comM 4761156..4762676 (+) 1521 WP_347114692.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHB66_RS22895 (AAHB66_22895) - 4762702..4763040 (-) 339 WP_142487543.1 DUF413 domain-containing protein -
  AAHB66_RS22900 (AAHB66_22900) hdfR 4763159..4763980 (+) 822 WP_347114693.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55294.54 Da        Isoelectric Point: 7.3624

>NTDB_id=989606 AAHB66_RS22890 WP_347114692.1 4761156..4762676(+) (comM) [Leclercia sp. S52]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSSSRLSAYEFVGELALTGALRGVPGAISGALAAIQAGREIIVANDNAAEVSLIEQKGCLVAEHL
QEVCAFLEGRHELAAPVQEPFEVENSDQDLSDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLNGLLPPLSNH
EALESAAIVSLVNATSMYKQWRRRPFRAPHHSASLMAMVGGGAIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQAHKAG
ETSLTVRNRVLAAQERQRVRQNKLNAHLDNAEIRRYCPLMAEDALWLEETLTRFGLSVRAWQRLLKVARTIADLEESEKI
ERRHLQEALSYRAIDRLLLHLQKMLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989606 AAHB66_RS22890 WP_347114692.1 4761156..4762676(+) (comM) [Leclercia sp. S52]
ATGTCACTGTCGGTTGTTTATACCCGCGCTGCGTTAGGCGTTAAAGCGCCGCTGATTTCCGTAGAAGTTCACCTCAGTAA
TGGCCTGCCGGGCTTAACCCTGGTCGGCCTGCCGGAAACTACCGTCAAGGAAGCCAGAGACCGGGTACGTAGCGCAATCA
TCAATAGCGGTTATACCTTTCCAGCCAAAAAGATCACCATCAATCTGGCCCCTGCCGATTTACCCAAGGAAGGCGGGCGA
TATGATTTACCTATCGCCATTGCGCTTCTCGCCGCCTCTGAGCAGCTCTCCTCTTCCCGACTGAGCGCATACGAGTTTGT
AGGTGAGCTGGCGCTTACAGGCGCATTAAGAGGGGTTCCTGGCGCGATATCTGGCGCTCTGGCGGCCATTCAGGCTGGCA
GAGAGATTATCGTCGCCAACGATAACGCTGCCGAAGTCAGCCTTATTGAACAAAAAGGCTGCCTGGTGGCAGAACACTTG
CAGGAAGTATGCGCTTTTCTTGAAGGTCGCCACGAGCTGGCTGCGCCCGTTCAGGAGCCGTTTGAGGTAGAAAACAGCGA
TCAGGACCTCAGCGATATTATCGGCCAGGAGCAGGGCAAACGGGCGCTGGAGATCACCGCGGCCGGCGCGCACAATCTGC
TACTCATTGGCCCACCCGGCACTGGCAAAACCATGCTCGCGAGTCGGCTCAATGGCCTGTTGCCGCCACTCAGCAACCAT
GAGGCGCTGGAGAGTGCGGCAATCGTCAGTCTGGTCAACGCCACATCGATGTATAAGCAGTGGCGCCGGCGTCCCTTTCG
GGCACCACACCACAGCGCCTCGCTCATGGCCATGGTGGGCGGGGGTGCTATCCCCGCGCCGGGAGAGATCTCGCTGGCGC
ATAACGGCATTCTCTTTCTGGATGAGTTACCCGAGTTTGAACGGCGCGTGCTGGATGCCTTACGCGAGCCTATCGAATCA
GGCCAGATTAATATCTCCCGTACCCGCGCCAAGATCAGTTATCCGGCTCGCTTTCAGCTTATCGCCGCCATGAACCCCAG
CCCAACGGGACACTATCAGGGTAACCATAATCGCTGTTCGCCCGAACAGACGCTCCGCTACCTGGGACGCCTGTCGGGCC
CGTTCCTCGATCGCTTCGATTTATCGCTTGAGATCCCGCTCCCACCGCCAGGGTTGCTAAGCCAGGCGCACAAAGCAGGA
GAAACCAGTCTCACCGTACGAAACAGAGTGCTCGCCGCGCAGGAACGTCAGCGGGTGCGGCAGAATAAACTCAATGCTCA
TCTGGATAATGCGGAGATCCGCAGGTATTGCCCCCTCATGGCAGAGGATGCCCTGTGGCTGGAAGAGACCCTTACCCGGT
TCGGCCTGTCGGTGCGTGCCTGGCAGCGGCTGCTAAAGGTGGCCCGCACGATTGCTGACCTGGAAGAGAGTGAAAAGATT
GAACGCAGGCATTTGCAGGAAGCCCTGAGCTATCGTGCTATTGACCGTCTGCTGTTGCACCTGCAAAAGATGCTGGAATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.613
  comM Glaesserella parasuis strain SC1401

60.552

100

0.607
  comM Vibrio campbellii strain DS40M4

59.245

99.407

0.589
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Legionella pneumophila str. Paris

50.704

98.221

0.498
  comM Legionella pneumophila strain ERS1305867

50.704

98.221

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.249

100

0.437

Multiple sequence alignment