Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAHB66_RS01365 Genome accession   NZ_CP152474
Coordinates   297555..298082 (+) Length   175 a.a.
NCBI ID   WP_039031947.1    Uniprot ID   -
Organism   Leclercia sp. S52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292555..303082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHB66_RS01345 (AAHB66_01345) aphA 292880..293593 (+) 714 WP_347114942.1 acid phosphatase AphA -
  AAHB66_RS01350 (AAHB66_01350) - 293704..294121 (+) 418 Protein_259 secondary thiamine-phosphate synthase enzyme YjbQ -
  AAHB66_RS01355 (AAHB66_01355) - 294124..294477 (+) 354 WP_142490045.1 MmcQ/YjbR family DNA-binding protein -
  AAHB66_RS01360 (AAHB66_01360) uvrA 294478..297303 (-) 2826 WP_347114943.1 excinuclease ABC subunit UvrA -
  AAHB66_RS01365 (AAHB66_01365) ssb 297555..298082 (+) 528 WP_039031947.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AAHB66_RS01370 (AAHB66_01370) - 298147..298428 (-) 282 WP_347114944.1 YjcB family protein -
  AAHB66_RS01375 (AAHB66_01375) - 299041..300369 (+) 1329 WP_347114945.1 sensor domain-containing diguanylate cyclase -
  AAHB66_RS01380 (AAHB66_01380) - 300708..302294 (+) 1587 WP_347114946.1 EAL domain-containing protein -
  AAHB66_RS01385 (AAHB66_01385) soxS 302291..302617 (-) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18721.73 Da        Isoelectric Point: 5.2456

>NTDB_id=989590 AAHB66_RS01365 WP_039031947.1 297555..298082(+) (ssb) [Leclercia sp. S52]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQPSAPA
QSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=989590 AAHB66_RS01365 WP_039031947.1 297555..298082(+) (ssb) [Leclercia sp. S52]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACGTCCGAATCCTGGCGCGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCAGAAAAATACACTACCGAAGTAGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCCGTCTGCACCGGCG
CAGTCCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.789
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.594
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366

Multiple sequence alignment