Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HMPREF9319_RS09560 Genome accession   NZ_GL397128
Coordinates   1989371..1989964 (-) Length   197 a.a.
NCBI ID   WP_003066922.1    Uniprot ID   E0PGF6
Organism   Streptococcus equinus ATCC 700338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984371..1994964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS09540 (HMPREF9319_1996) - 1985967..1986920 (-) 954 WP_003066905.1 MFS transporter -
  HMPREF9319_RS11285 (HMPREF9319_1997) - 1987367..1987576 (-) 210 WP_003066908.1 hypothetical protein -
  HMPREF9319_RS11290 (HMPREF9319_1998) - 1987534..1987815 (-) 282 WP_003066911.1 hypothetical protein -
  HMPREF9319_RS11295 (HMPREF9319_1999) - 1987885..1988055 (-) 171 WP_231729898.1 hypothetical protein -
  HMPREF9319_RS11300 (HMPREF9319_2000) - 1988116..1988292 (-) 177 WP_003066916.1 hypothetical protein -
  HMPREF9319_RS09555 (HMPREF9319_2001) - 1988440..1989291 (+) 852 WP_003066919.1 helix-turn-helix domain-containing protein -
  HMPREF9319_RS09560 (HMPREF9319_2002) ruvA 1989371..1989964 (-) 594 WP_003066922.1 Holliday junction branch migration protein RuvA Machinery gene
  HMPREF9319_RS09565 (HMPREF9319_2003) hexB 1989966..1991909 (-) 1944 WP_003066924.1 DNA mismatch repair endonuclease MutL Machinery gene
  HMPREF9319_RS09570 (HMPREF9319_2004) hexA 1992025..1994595 (-) 2571 WP_003066925.1 DNA mismatch repair protein MutS Machinery gene
  HMPREF9319_RS09575 (HMPREF9319_2005) - 1994582..1994938 (-) 357 WP_003066927.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21782.20 Da        Isoelectric Point: 5.3568

>NTDB_id=989452 HMPREF9319_RS09560 WP_003066922.1 1989371..1989964(-) (ruvA) [Streptococcus equinus ATCC 700338]
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=989452 HMPREF9319_RS09560 WP_003066922.1 1989371..1989964(-) (ruvA) [Streptococcus equinus ATCC 700338]
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTATCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

69.192

100

0.695
  ruvA Streptococcus pneumoniae D39

69.192

100

0.695
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426