Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   STRINF_RS01870 Genome accession   NZ_DS572685
Coordinates   24931..25929 (+) Length   332 a.a.
NCBI ID   WP_006531310.1    Uniprot ID   A0ABM9XGB3
Organism   Streptococcus infantarius subsp. infantarius ATCC BAA-102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19931..30929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRINF_RS01845 (STRINF_00389) - 20204..20610 (+) 407 Protein_16 DUF523 domain-containing protein -
  STRINF_RS01850 (STRINF_00390) purE 20610..21098 (+) 489 WP_006531305.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  STRINF_RS01855 (STRINF_00391) purK 21085..22176 (+) 1092 WP_006531306.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  STRINF_RS10415 - 22179..22274 (+) 96 Protein_19 phosphoribosylaminoimidazole carboxylase -
  STRINF_RS01860 (STRINF_00392) purB 22364..23662 (+) 1299 WP_006531307.1 adenylosuccinate lyase -
  STRINF_RS01865 (STRINF_00393) comR 23851..24729 (+) 879 WP_174221231.1 helix-turn-helix domain-containing protein Regulator
  STRINF_RS01870 (STRINF_00395) ruvB 24931..25929 (+) 999 WP_006531310.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  STRINF_RS10420 (STRINF_00396) - 26102..26308 (+) 207 WP_006531311.1 DUF7010 family protein -
  STRINF_RS10865 (STRINF_00397) - 26268..26633 (+) 366 WP_398577259.1 DUF7010 family protein -
  STRINF_RS01880 (STRINF_00398) - 26872..27303 (+) 432 Protein_25 low molecular weight protein-tyrosine-phosphatase -
  STRINF_RS01885 (STRINF_00399) - 27321..27701 (+) 381 WP_006531314.1 membrane protein -
  STRINF_RS01890 (STRINF_00400) - 27698..29491 (+) 1794 WP_006531315.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37404.88 Da        Isoelectric Point: 4.6106

>NTDB_id=989349 STRINF_RS01870 WP_006531310.1 24931..25929(+) (ruvB) [Streptococcus infantarius subsp. infantarius ATCC BAA-102]
MNRILDNDIMGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAVDDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
KDITDKALTMLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATAK
AYDHLGYPYAEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=989349 STRINF_RS01870 WP_006531310.1 24931..25929(+) (ruvB) [Streptococcus infantarius subsp. infantarius ATCC BAA-102]
ATGAATAGAATTTTAGATAATGATATCATGGGTGACGAAGAATTTGTGGAACGTACGCTTCGTCCTCAATATTTAAAAGA
ATATATTGGACAGGATAAGGTTAAAAATCAGCTGAAAATTTTTATTGAAGCAGCAAAATTACGTGATGAATCACTTGACC
ATGTGCTATTGTTTGGCCCTCCGGGTCTTGGTAAGACGACAATGGCATTTGTGATTGCTAACGAATTAGGGGTGAATCTC
AAACAAACATCTGGGCCAGCAATTGAAAAAGCTGGTGATTTGGTTGCTATTTTGAATGATTTGGAACCTGGGGATGTTTT
GTTTATCGATGAAATTCACCGTATGCCAATGGCGGTAGAAGAAGTGCTCTATAGTGCGATGGAAGATTTCTATATTGACA
TTATGATTGGTAATGGTGAGACTAGTCGTAGTGTCCATTTGGATTTGCCACCTTTTACGCTAATTGGAGCAACAACTCGA
GCAGGAATGCTTTCGAATCCGTTGCGTGCGCGTTTTGGAATTACGGGGCATATGGAATATTATGCGGTTGACGATTTGAC
AGAAATTGTTGAACGTACAGCTGATATTTTTGAAATGGAAATCGTGCATGAAGCTGCACAAGAATTGGCGCGACGTAGCC
GAGGTACACCACGTATTGCCAACCGTTTGTTAAAACGGGTTCGTGACTATGCTCAAATTATGGGTGATGGTATTATTACA
AAAGATATTACAGATAAAGCTTTAACAATGCTGGATGTCGATCATGAAGGGCTTGATTACATTGACCAAAAAATCTTGCG
TACTATGATTGAAGTTTATAATGGTGGTCCAGTTGGTTTGGGAACTCTATCTGTTAATATTGCTGAAGAGCGTGATACGG
TTGAGGATATGTATGAACCTTATTTGATTCAAAAGGGTTTTATTATGCGTACACGTACAGGTCGTGTAGCTACAGCTAAA
GCATATGATCATCTGGGGTATCCTTATGCTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

89.759

100

0.898
  ruvB Streptococcus pneumoniae R6

89.759

100

0.898
  ruvB Streptococcus pneumoniae D39

89.759

100

0.898
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.61

97.289

0.599
  ruvB Helicobacter pylori 26695

49.693

98.193

0.488
  ruvB Synechocystis sp. PCC 6803

49.84

94.277

0.47

Multiple sequence alignment