Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   AAFQ93_RS09430 Genome accession   NZ_CP152419
Coordinates   1980804..1981466 (+) Length   220 a.a.
NCBI ID   WP_223140086.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1975804..1986466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS09385 (AAFQ93_09320) - 1976129..1976854 (+) 726 WP_375555278.1 16S rRNA pseudouridine(516) synthase -
  AAFQ93_RS09390 (AAFQ93_09325) - 1976899..1977126 (-) 228 WP_375555279.1 DUF4190 domain-containing protein -
  AAFQ93_RS09395 (AAFQ93_09330) - 1977242..1977469 (-) 228 WP_000660082.1 hypothetical protein -
  AAFQ93_RS09400 (AAFQ93_09335) - 1977562..1977942 (-) 381 WP_045763154.1 rhodanese-like domain-containing protein -
  AAFQ93_RS09405 (AAFQ93_09340) - 1977948..1978172 (-) 225 WP_000646475.1 YqgQ family protein -
  AAFQ93_RS09410 (AAFQ93_09345) - 1978241..1978702 (-) 462 WP_375555280.1 ECF transporter S component -
  AAFQ93_RS09415 (AAFQ93_09350) - 1978680..1979453 (-) 774 WP_375555281.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AAFQ93_RS09420 (AAFQ93_09355) truA 1979443..1980192 (-) 750 WP_375555282.1 tRNA pseudouridine(38-40) synthase TruA -
  AAFQ93_RS09425 (AAFQ93_09360) - 1980278..1980733 (-) 456 WP_375555283.1 GNAT family N-acetyltransferase -
  AAFQ93_RS09430 (AAFQ93_09365) cclA/cilC 1980804..1981466 (+) 663 WP_223140086.1 A24 family peptidase Machinery gene
  AAFQ93_RS09435 (AAFQ93_09370) trpA 1981435..1982217 (-) 783 WP_223140087.1 tryptophan synthase subunit alpha -
  AAFQ93_RS09440 (AAFQ93_09375) trpB 1982210..1983433 (-) 1224 WP_375555284.1 tryptophan synthase subunit beta -
  AAFQ93_RS09445 (AAFQ93_09380) - 1983411..1984010 (-) 600 WP_223140089.1 phosphoribosylanthranilate isomerase -
  AAFQ93_RS09450 (AAFQ93_09385) trpC 1983997..1984764 (-) 768 WP_223140090.1 indole-3-glycerol phosphate synthase TrpC -
  AAFQ93_RS09455 (AAFQ93_09390) trpD 1984761..1985765 (-) 1005 WP_223140091.1 anthranilate phosphoribosyltransferase -
  AAFQ93_RS09460 (AAFQ93_09395) - 1985776..1986342 (-) 567 WP_223140092.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24853.32 Da        Isoelectric Point: 8.0373

>NTDB_id=989193 AAFQ93_RS09430 WP_223140086.1 1980804..1981466(+) (cclA/cilC) [Streptococcus nidrosiense strain SO-23-1]
MIHLYFFLVGTILASFLGLVIDRFPEQSIVFPASHCDSCQTRLRPLDLIPIVSQIFNRFLCRYCKARYPVWYALFELCLG
LLFLAGSLGFLTLSQVILVTAGLTLSIYDLRHQEYPLLVWLTFHLVLMVCCGWNLIMAFFLILGIIAHVIDIRIGAGDFL
FLTSCALIFSLTEMLILIQFASTTGILAFLLLKKKERLPFVPFLLLATCVIILGKLLLLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=989193 AAFQ93_RS09430 WP_223140086.1 1980804..1981466(+) (cclA/cilC) [Streptococcus nidrosiense strain SO-23-1]
ATGATTCATCTTTATTTTTTTCTTGTTGGAACAATTCTTGCTTCCTTTCTAGGCTTAGTCATCGATCGCTTCCCTGAACA
ATCCATCGTCTTTCCTGCAAGTCACTGTGATTCTTGTCAGACTCGCTTGAGACCACTAGATTTGATTCCGATTGTGTCCC
AGATATTCAATCGCTTTCTCTGTCGCTATTGCAAGGCTCGCTATCCTGTTTGGTATGCCCTCTTTGAGTTGTGCTTAGGA
CTGCTCTTTCTAGCTGGGTCTTTGGGATTTCTAACTCTAAGTCAAGTCATCCTAGTCACTGCTGGCTTGACTTTGAGCAT
CTATGACCTTCGTCATCAAGAATATCCCTTGCTAGTCTGGCTGACTTTCCACCTAGTCCTCATGGTATGCTGTGGTTGGA
ATCTAATCATGGCTTTCTTCTTGATTCTTGGAATCATTGCCCATGTTATTGATATTCGCATTGGGGCAGGTGATTTTCTC
TTTCTGACTTCTTGTGCCCTTATTTTTAGCCTAACTGAAATGCTGATTTTAATTCAATTTGCTTCTACAACCGGCATTCT
AGCCTTTCTCCTGCTAAAGAAAAAGGAAAGACTTCCTTTTGTGCCTTTCCTCTTGCTAGCTACTTGTGTGATTATTTTGG
GTAAGCTACTGCTTCTCGGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

82.192

99.545

0.818
  cclA/cilC Streptococcus pneumoniae Rx1

81.279

99.545

0.809
  cclA/cilC Streptococcus pneumoniae D39

81.279

99.545

0.809
  cclA/cilC Streptococcus pneumoniae R6

81.279

99.545

0.809
  cclA/cilC Streptococcus mitis NCTC 12261

80.822

99.545

0.805
  cclA/cilC Streptococcus pneumoniae TIGR4

79.452

99.545

0.791

Multiple sequence alignment