Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   AAFQ93_RS05940 Genome accession   NZ_CP152419
Coordinates   1249303..1250259 (+) Length   318 a.a.
NCBI ID   WP_375554918.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1244303..1255259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS05925 (AAFQ93_05910) smpB 1246518..1246985 (+) 468 WP_001051741.1 SsrA-binding protein SmpB -
  AAFQ93_RS05930 (AAFQ93_05915) tehB 1247000..1247860 (+) 861 WP_223140883.1 SAM-dependent methyltransferase TehB -
  AAFQ93_RS05935 (AAFQ93_05920) - 1248059..1249207 (+) 1149 WP_375554917.1 hypothetical protein -
  AAFQ93_RS05940 (AAFQ93_05925) coiA 1249303..1250259 (+) 957 WP_375554918.1 competence protein CoiA Machinery gene
  AAFQ93_RS05945 (AAFQ93_05930) pepF 1250278..1252080 (+) 1803 WP_375554919.1 oligoendopeptidase F Regulator
  AAFQ93_RS05950 (AAFQ93_05935) - 1252086..1252799 (+) 714 WP_075230470.1 O-methyltransferase -
  AAFQ93_RS05955 (AAFQ93_05940) prsA 1252873..1253814 (+) 942 WP_375554920.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 38353.12 Da        Isoelectric Point: 9.0999

>NTDB_id=989174 AAFQ93_RS05940 WP_375554918.1 1249303..1250259(+) (coiA) [Streptococcus nidrosiense strain SO-23-1]
MFLARDENGDLISALADEVKKQAYFCPACGTSVRLRKGKNVRAHFAHESLKKCDFFHENEGPEHLENKKSLFYWAKKNAK
VEMECLIPEPKQIADIFINKQLALEIQCSPISCELLRERSNGYRSLGIQVLWLLGEKLWLKERLTKLQRDFLYFSNNMGF
YLWELDHKKQVLRLKYLLHQDLKGKLHYQVKEFSYDKGNLLEILRIPYHQQNLTTFSVEQDRNICHYIQKQLYYQNPYWM
KQQAQAYLRGENLLNLKTQDWYPQVRPIEHGHFCQISQNLYDYYRNFQVYYELNPHNQQQKLYPPAFYQHYFLKNMVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=989174 AAFQ93_RS05940 WP_375554918.1 1249303..1250259(+) (coiA) [Streptococcus nidrosiense strain SO-23-1]
ATGTTTTTAGCCAGAGATGAAAATGGGGATTTAATCAGCGCTTTAGCGGATGAAGTAAAGAAGCAAGCTTATTTTTGTCC
GGCTTGTGGAACAAGTGTCCGCTTGAGGAAAGGAAAAAACGTGCGTGCACATTTCGCTCATGAAAGTCTCAAAAAATGTG
ATTTTTTTCATGAAAATGAAGGACCAGAACACCTAGAAAATAAGAAAAGTCTGTTTTATTGGGCTAAGAAGAATGCTAAG
GTAGAGATGGAATGCCTGATACCTGAACCGAAGCAAATTGCAGATATCTTTATCAATAAACAACTAGCTCTAGAAATTCA
GTGCAGTCCCATTTCTTGTGAACTTTTACGGGAGAGAAGCAATGGTTATCGAAGTTTGGGAATTCAAGTTCTTTGGCTAC
TGGGAGAAAAGCTCTGGCTAAAAGAGCGACTAACTAAACTTCAAAGAGATTTTCTTTATTTTAGTAATAATATGGGATTT
TATCTTTGGGAGTTAGACCATAAAAAACAAGTTTTAAGACTTAAGTACCTCCTTCACCAAGATTTGAAAGGGAAACTCCA
TTATCAGGTTAAGGAATTTTCTTATGACAAAGGAAATCTTCTAGAAATATTACGGATTCCTTATCATCAACAAAATCTTA
CCACTTTTTCGGTTGAACAAGATAGGAACATTTGTCATTACATTCAAAAACAGCTCTATTATCAAAACCCCTATTGGATG
AAACAACAAGCACAAGCTTACTTGAGAGGAGAAAACCTATTAAATTTGAAGACTCAGGACTGGTATCCCCAAGTAAGGCC
GATAGAACATGGTCATTTTTGTCAGATAAGTCAAAATCTATATGATTATTACCGCAACTTTCAGGTTTATTATGAACTGA
ATCCACATAATCAGCAACAAAAGCTCTATCCACCTGCCTTTTATCAGCATTATTTCTTAAAAAATATGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

65.094

100

0.651
  coiA Streptococcus pneumoniae TIGR4

63.836

100

0.638
  coiA Streptococcus pneumoniae Rx1

63.836

100

0.638
  coiA Streptococcus pneumoniae D39

63.836

100

0.638
  coiA Streptococcus pneumoniae R6

63.836

100

0.638
  coiA Lactococcus lactis subsp. cremoris KW2

39.752

100

0.403

Multiple sequence alignment