Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AAFQ93_RS05945 Genome accession   NZ_CP152419
Coordinates   1250278..1252080 (+) Length   600 a.a.
NCBI ID   WP_375554919.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245278..1257080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS05925 (AAFQ93_05910) smpB 1246518..1246985 (+) 468 WP_001051741.1 SsrA-binding protein SmpB -
  AAFQ93_RS05930 (AAFQ93_05915) tehB 1247000..1247860 (+) 861 WP_223140883.1 SAM-dependent methyltransferase TehB -
  AAFQ93_RS05935 (AAFQ93_05920) - 1248059..1249207 (+) 1149 WP_375554917.1 hypothetical protein -
  AAFQ93_RS05940 (AAFQ93_05925) coiA 1249303..1250259 (+) 957 WP_375554918.1 competence protein CoiA Machinery gene
  AAFQ93_RS05945 (AAFQ93_05930) pepF 1250278..1252080 (+) 1803 WP_375554919.1 oligoendopeptidase F Regulator
  AAFQ93_RS05950 (AAFQ93_05935) - 1252086..1252799 (+) 714 WP_075230470.1 O-methyltransferase -
  AAFQ93_RS05955 (AAFQ93_05940) prsA 1252873..1253814 (+) 942 WP_375554920.1 peptidylprolyl isomerase PrsA -
  AAFQ93_RS05960 (AAFQ93_05945) ftsW 1254087..1255298 (+) 1212 WP_049530447.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69909.91 Da        Isoelectric Point: 4.5713

>NTDB_id=989175 AAFQ93_RS05945 WP_375554919.1 1250278..1252080(+) (pepF) [Streptococcus nidrosiense strain SO-23-1]
MVLQRNEINEKDTWDLSTIFETDQKWEEELALLTEDTKQAASLEGHLLDSAESLLEITERYLELSRRLEKLYVYAHMKND
QDTRVAKYQEYYAKAMTLYSQLDQVFSFYEPEFMAITEDQYQNFLAEEPKLQPYKHFFDKLLQNKDHVLSQREEELLAGA
GEIFGAASETFAILDNADIVFPFVKDEDGNEVQLSHGVYMRLVESKNREVRRGAYESLYATYEQYQHTYAKTLQTNVKVQ
NYRAKVRNYKSAREAALAANFVPESVYDNLVSAVRKHLPLLHRYLALRSKILGIPDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLQEVQDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNSEVLTSEF
LNNLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NIMRKAGVDMEKEDYLNDAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=989175 AAFQ93_RS05945 WP_375554919.1 1250278..1252080(+) (pepF) [Streptococcus nidrosiense strain SO-23-1]
ATGGTATTACAACGAAATGAAATCAATGAAAAAGATACATGGGATCTATCAACGATCTTTGAAACAGACCAAAAATGGGA
AGAAGAACTCGCCCTTTTAACGGAAGATACAAAACAAGCAGCTAGTCTTGAGGGTCATCTCTTGGACAGTGCAGAAAGCC
TTCTTGAAATTACAGAGCGTTATCTGGAATTGAGTCGTCGTCTTGAAAAACTCTATGTCTACGCACATATGAAAAACGAC
CAGGATACACGAGTTGCTAAATATCAAGAATACTATGCAAAAGCTATGACTCTTTATAGTCAACTTGATCAAGTCTTCTC
TTTCTATGAGCCTGAATTTATGGCAATCACAGAAGATCAGTATCAAAACTTTCTAGCAGAAGAACCAAAACTCCAGCCTT
ATAAACACTTCTTTGATAAACTCTTGCAAAATAAGGACCATGTCCTTTCACAACGTGAAGAAGAGTTGCTTGCAGGTGCT
GGGGAAATCTTCGGTGCTGCTAGTGAAACCTTTGCTATTTTAGATAATGCAGATATCGTCTTTCCATTTGTTAAAGATGA
AGATGGAAATGAAGTTCAATTATCACACGGCGTTTATATGCGCTTGGTAGAATCTAAGAATCGTGAGGTTCGTCGTGGAG
CTTATGAATCCCTCTATGCTACTTATGAGCAATACCAGCACACTTACGCTAAAACCTTGCAGACCAATGTTAAAGTGCAA
AACTACCGTGCAAAAGTTCGAAACTATAAGAGTGCGCGTGAAGCAGCTCTTGCAGCAAACTTTGTGCCAGAAAGTGTTTA
TGACAATCTAGTATCTGCTGTTCGTAAGCATTTGCCACTCTTGCATCGTTATTTGGCTCTTCGTTCAAAAATCTTGGGTA
TTCCAGATCTCAAGATGTACGATGTTTATACCCCATTGTCTTCAGTGGAATACAGCTTTACTTATGAGGAAGCCTTGAAG
AAAGCAGAAGAAGCTTTGGCAGTTCTTGGTGAGGATTACTTGAGCCGAGTTAAACGTGCCTTCAGCGAACGTTGGATTGA
TGTTTATGAAAATCAAGGCAAGCGTTCAGGTGCATATTCAGGTGGATCATACGATACAAATGCCTTCATGCTCCTTAACT
GGCAGGATAACCTCGATAATCTCTTTACTCTTGTACATGAGACAGGTCACAGTATGCATTCTAGCTATACACGTGAAACA
CAGCCTTATGTATACGGAGATTACTCAATCTTCTTGGCAGAAATTGCTTCAACTACTAATGAAAATATCTTAACTGAAAA
ATTATTGCAAGAAGTTCAAGACGATGCAACACGCTTTGCGATTCTCAACAACTTCTTGGATGGTTTCCGTGGAACAGTCT
TCCGCCAAACTCAATTTGCAGAATTTGAACATGCCATCCACCAAGCCGATCAAAATAGTGAAGTCTTGACAAGTGAGTTC
CTAAACAATCTCTACGCTGACTTGAACCAAGAATACTATGGCTTGAGCAAGGAAGACAACCCTCAAATCCAGTACGAGTG
GGCTCGAATTCCTCATTTCTACTATAACTACTATGTGTATCAATATTCAACAGGTTTTGCTGCAGCTTCAGCCTTGGCTG
AAAAGATTGTTCATGGTAGCCAAGAGGATCGTGATCGCTATATCGACTACCTCAAAGCAGGGAAGTCAGACTATCCACTC
AATATCATGCGTAAAGCTGGTGTTGATATGGAAAAAGAAGATTACCTCAACGACGCCTTTGCAGTCTTTGAACGCCGTTT
GGATGAGTTTGAAGCCCTTGTTGAAAAATTAGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment