Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AAFQ93_RS02075 Genome accession   NZ_CP152419
Coordinates   427080..427742 (+) Length   220 a.a.
NCBI ID   WP_223140380.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422080..432742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS02050 (AAFQ93_02055) tsf 422449..423489 (+) 1041 WP_000808094.1 translation elongation factor Ts -
  AAFQ93_RS02055 (AAFQ93_02060) cysK 423611..424537 (-) 927 WP_153224651.1 cysteine synthase A -
  AAFQ93_RS02060 (AAFQ93_02065) - 424634..425077 (-) 444 WP_045762425.1 PH domain-containing protein -
  AAFQ93_RS02065 (AAFQ93_02070) - 425094..425729 (-) 636 WP_223140378.1 YigZ family protein -
  AAFQ93_RS02070 (AAFQ93_02075) comFA/cflA 425785..427083 (+) 1299 WP_223140379.1 DEAD/DEAH box helicase Machinery gene
  AAFQ93_RS02075 (AAFQ93_02080) comFC/cflB 427080..427742 (+) 663 WP_223140380.1 ComF family protein Machinery gene
  AAFQ93_RS02080 (AAFQ93_02085) hpf 427822..428364 (+) 543 WP_045762429.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AAFQ93_RS02085 (AAFQ93_02090) - 428513..430486 (+) 1974 WP_375555473.1 DHH family phosphoesterase -
  AAFQ93_RS02090 (AAFQ93_02095) rplI 430483..430935 (+) 453 WP_000864204.1 50S ribosomal protein L9 -
  AAFQ93_RS02095 (AAFQ93_02100) dnaB 430978..432336 (+) 1359 WP_000852500.1 replicative DNA helicase -
  AAFQ93_RS02100 (AAFQ93_02105) - 432333..432599 (+) 267 WP_000128621.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25251.39 Da        Isoelectric Point: 8.2548

>NTDB_id=989154 AAFQ93_RS02075 WP_223140380.1 427080..427742(+) (comFC/cflB) [Streptococcus nidrosiense strain SO-23-1]
MKCLLCGKSLQTEITFTNLLCFKKEEELVCESCISSFESIGGNHCPSCFKKGLSTICQDCQFWCKKGVKVDHVALYSYNQ
AMKEYFSRYKFDGDYLLRKVFSEILQKELKKYKDYQIVIVPLSDERLKSRGFNQVEGLIKDTGLAYLDILVKKEVEASSS
KNRADRLLTEFPFFLKDGVKPPENILLFDDIYTTGTTLNRLKSMLLEAGCQNIKTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=989154 AAFQ93_RS02075 WP_223140380.1 427080..427742(+) (comFC/cflB) [Streptococcus nidrosiense strain SO-23-1]
ATGAAGTGTTTATTGTGTGGTAAAAGCTTGCAAACAGAGATAACTTTTACTAACCTGCTCTGTTTTAAAAAGGAGGAGGA
ACTAGTTTGTGAATCCTGTATTTCGTCTTTCGAGAGCATTGGTGGTAATCATTGTCCGAGTTGTTTTAAAAAAGGTTTGT
CAACTATTTGTCAAGATTGTCAATTTTGGTGTAAAAAAGGTGTAAAGGTTGATCATGTGGCTCTTTATTCCTATAATCAG
GCCATGAAAGAATATTTTAGTCGCTATAAATTTGATGGTGATTATCTTCTTAGAAAGGTATTTTCTGAGATATTGCAAAA
AGAGTTAAAGAAGTATAAGGACTATCAGATTGTGATTGTTCCTCTGAGTGACGAGCGTTTAAAAAGCAGAGGCTTTAATC
AAGTTGAGGGTTTGATAAAGGATACTGGGTTAGCATATCTGGATATTTTGGTTAAAAAAGAAGTGGAGGCTAGTTCTTCA
AAAAATCGAGCTGATCGTTTACTTACAGAGTTTCCATTTTTTCTGAAAGATGGCGTGAAGCCCCCAGAAAATATCTTACT
CTTTGATGATATTTATACAACTGGAACTACCTTGAATCGTCTTAAAAGTATGCTATTAGAGGCTGGTTGTCAGAATATTA
AAACTTTTTCCCTCGCAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

61.364

100

0.614
  comFC/cflB Streptococcus pneumoniae TIGR4

60

100

0.6
  comFC/cflB Streptococcus pneumoniae Rx1

60

100

0.6
  comFC/cflB Streptococcus pneumoniae D39

60

100

0.6
  comFC/cflB Streptococcus pneumoniae R6

60

100

0.6
  comFC/cflB Streptococcus mitis SK321

59.545

100

0.595

Multiple sequence alignment