Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   AAFQ93_RS02070 Genome accession   NZ_CP152419
Coordinates   425785..427083 (+) Length   432 a.a.
NCBI ID   WP_223140379.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420785..432083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS02045 (AAFQ93_02050) rpsB 421588..422370 (+) 783 WP_000268462.1 30S ribosomal protein S2 -
  AAFQ93_RS02050 (AAFQ93_02055) tsf 422449..423489 (+) 1041 WP_000808094.1 translation elongation factor Ts -
  AAFQ93_RS02055 (AAFQ93_02060) cysK 423611..424537 (-) 927 WP_153224651.1 cysteine synthase A -
  AAFQ93_RS02060 (AAFQ93_02065) - 424634..425077 (-) 444 WP_045762425.1 PH domain-containing protein -
  AAFQ93_RS02065 (AAFQ93_02070) - 425094..425729 (-) 636 WP_223140378.1 YigZ family protein -
  AAFQ93_RS02070 (AAFQ93_02075) comFA/cflA 425785..427083 (+) 1299 WP_223140379.1 DEAD/DEAH box helicase Machinery gene
  AAFQ93_RS02075 (AAFQ93_02080) comFC/cflB 427080..427742 (+) 663 WP_223140380.1 ComF family protein Machinery gene
  AAFQ93_RS02080 (AAFQ93_02085) hpf 427822..428364 (+) 543 WP_045762429.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AAFQ93_RS02085 (AAFQ93_02090) - 428513..430486 (+) 1974 WP_375555473.1 DHH family phosphoesterase -
  AAFQ93_RS02090 (AAFQ93_02095) rplI 430483..430935 (+) 453 WP_000864204.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 49329.28 Da        Isoelectric Point: 8.5336

>NTDB_id=989153 AAFQ93_RS02070 WP_223140379.1 425785..427083(+) (comFA/cflA) [Streptococcus nidrosiense strain SO-23-1]
MKVNPNYLGRLFTEQELSHEERQQAKQIPSMKKEKGQLSCQRCGSQIEEEWHLPIGAFYCLECLIMKRIRSDQKLYYFPQ
ECFPKQDVLKWSGQLTPFQERVSQGLLQAVDKKEATLVHAVTGAGKTEMIYQVVAKVIDQGGAVCLASPRIDVCLELHKR
LQNDFACDIALLHGESDPYFRTPLVVATTHQLLKFYQAFDLLIVDEVDAFPYVDNPVLYHAVNNCVKETGLRIFLTATST
DELDRKVKQGELKRLSLPRRFHGNPLIVPKPIWLSHFNRYLEKNGLPPKLKLYIEKQRKTAYPLLIFASEIKKGEKLKEI
LQAKFPNEKIGFVSSITEDRLEQVQAFRDGELTILISTTILERGVTFPLVDVFVVEANHQLFTKSSLVQIGGRVGRSMDR
PTGELIFFHDGLNLSIKKAIKEIKQMNQEAGV

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=989153 AAFQ93_RS02070 WP_223140379.1 425785..427083(+) (comFA/cflA) [Streptococcus nidrosiense strain SO-23-1]
ATGAAAGTAAATCCAAATTATCTCGGTCGCCTTTTTACCGAGCAAGAATTAAGTCATGAGGAGAGACAACAAGCAAAACA
AATTCCATCCATGAAAAAAGAAAAGGGGCAACTATCTTGTCAGCGTTGTGGTAGTCAGATAGAAGAAGAATGGCATTTGC
CTATTGGTGCTTTTTATTGTCTAGAATGCTTGATTATGAAGCGAATAAGAAGTGATCAAAAACTCTATTACTTTCCGCAA
GAATGTTTTCCCAAGCAAGATGTACTCAAATGGTCAGGTCAACTGACTCCATTTCAAGAGCGGGTATCACAAGGACTCCT
TCAGGCGGTAGATAAGAAGGAGGCTACCTTGGTACATGCAGTGACAGGAGCTGGTAAGACAGAGATGATTTACCAAGTTG
TTGCCAAGGTGATTGATCAAGGTGGAGCTGTTTGTTTGGCCAGTCCACGAATTGATGTTTGCCTAGAGCTCCATAAACGA
CTACAAAATGATTTTGCATGTGATATTGCGCTACTACATGGGGAGTCGGATCCCTATTTTCGTACACCTTTAGTTGTAGC
AACCACTCACCAACTATTAAAATTTTATCAAGCTTTTGATTTATTGATTGTGGATGAAGTAGACGCCTTCCCTTATGTTG
ATAATCCTGTACTTTACCATGCTGTCAATAATTGTGTAAAGGAGACCGGATTGAGAATATTTTTAACAGCAACTTCAACT
GATGAGTTAGATAGAAAAGTTAAACAAGGGGAGTTAAAGCGTCTTAGTTTACCTCGTCGTTTTCATGGAAATCCTCTCAT
TGTTCCCAAGCCAATCTGGTTATCGCATTTTAATAGATATTTAGAAAAAAATGGCTTACCTCCAAAATTAAAACTTTACA
TTGAGAAACAGAGAAAGACGGCCTATCCCTTACTAATCTTTGCCTCTGAGATTAAAAAGGGAGAAAAGCTAAAAGAAATT
TTGCAGGCGAAGTTTCCGAATGAGAAAATAGGATTTGTATCTTCAATCACAGAAGACCGATTAGAGCAGGTACAGGCCTT
TCGAGATGGAGAGTTGACGATATTAATAAGCACAACTATATTAGAGCGTGGAGTTACCTTCCCTCTTGTAGATGTTTTTG
TGGTGGAAGCCAATCATCAACTCTTTACCAAGTCAAGTTTAGTACAAATTGGTGGGCGAGTTGGAAGAAGCATGGATCGT
CCTACCGGAGAACTGATATTTTTCCATGACGGACTCAATCTGTCCATTAAGAAAGCCATAAAGGAGATTAAGCAAATGAA
TCAGGAGGCAGGAGTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-238)

Helicase conserved C-terminal domain (Helicase_C)

(294-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

84.954

100

0.85
  comFA/cflA Streptococcus pneumoniae Rx1

84.722

100

0.847
  comFA/cflA Streptococcus pneumoniae D39

84.722

100

0.847
  comFA/cflA Streptococcus pneumoniae R6

84.722

100

0.847
  comFA/cflA Streptococcus pneumoniae TIGR4

84.491

100

0.845
  comFA/cflA Streptococcus mitis SK321

84.259

100

0.843
  comFA Lactococcus lactis subsp. cremoris KW2

52.645

91.898

0.484
  comFA Latilactobacillus sakei subsp. sakei 23K

39.588

100

0.4
  comFA Bacillus subtilis subsp. subtilis str. 168

38.293

94.907

0.363

Multiple sequence alignment