Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAGQ96_RS20800 Genome accession   NZ_CP152417
Coordinates   4516009..4517529 (+) Length   506 a.a.
NCBI ID   WP_147200293.1    Uniprot ID   -
Organism   Pantoea sp. MBD-2R     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4511009..4522529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ96_RS20780 (AAGQ96_20780) - 4512584..4513510 (-) 927 WP_147200289.1 branched-chain amino acid transaminase -
  AAGQ96_RS20785 (AAGQ96_20785) ilvM 4513529..4513786 (-) 258 WP_147200290.1 acetolactate synthase 2 small subunit -
  AAGQ96_RS20790 (AAGQ96_20790) ilvG 4513783..4515429 (-) 1647 WP_147200291.1 acetolactate synthase 2 catalytic subunit -
  AAGQ96_RS20795 (AAGQ96_20795) - 4515570..4515668 (-) 99 WP_147200292.1 IlvGEDA operon leader peptide -
  AAGQ96_RS20800 (AAGQ96_20800) comM 4516009..4517529 (+) 1521 WP_147200293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAGQ96_RS20805 (AAGQ96_20805) - 4517602..4517940 (-) 339 WP_147200294.1 DUF413 domain-containing protein -
  AAGQ96_RS20810 (AAGQ96_20810) hdfR 4518062..4518886 (+) 825 WP_147200295.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54659.87 Da        Isoelectric Point: 8.0395

>NTDB_id=989042 AAGQ96_RS20800 WP_147200293.1 4516009..4517529(+) (comM) [Pantoea sp. MBD-2R]
MSLSVIYTRAAIGVEAPLVSVEVHLSNGLPALTLVGLPETTVKEARERVRSAMINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQISADKLMQYEFLGELALTGALRSVQGAIPAAMAAIADQRQLILSTDNHQDAGLIHHGQSLVAANL
LEVCAFLNGQSPLEVAYCHLDQPPASSGDLNEIIGQQQAKRALEITAAGGHNLLLIGPPGTGKTMLANRLNGLLPPLNDR
EALESAAIASLVSSPLLHQQWRQRPFRAPHHTSSSYALVGGGAIPKPGEISLAHNGVLFLDELPEFARKTLDALREPIES
GKISLSRARAKITYPACFQLVAAMNPSPTGHHSGSHSRSTPQQTLRYLSRLSGPFLDRFDLSLEVPLLPSGTLSGKRKES
ESSATVRQRVLAAREVQLKRAGMINGALGPKEIRCYCEIEREDAQWLEDVLNHLGLSVRAWQRILKVARTIADLAGVENV
QRIHLNEALSYRGIDRLLINLLKSLD

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=989042 AAGQ96_RS20800 WP_147200293.1 4516009..4517529(+) (comM) [Pantoea sp. MBD-2R]
ATGTCGCTATCAGTCATATATACCCGCGCTGCCATAGGCGTTGAAGCCCCACTGGTGTCGGTAGAGGTCCATCTTAGCAA
CGGATTACCTGCGCTAACGCTGGTCGGGTTGCCTGAAACCACGGTAAAAGAGGCTCGTGAACGTGTACGTAGCGCAATGA
TCAATTGTGGATTCACGTTTCCGGCAAAGCGTATTACCGTGAATCTGGCTCCCGCCGACCTGCCTAAAGAGGGAGGCCGG
TACGATTTACCGATTGCCATTGCCATTCTCGCCGCCTCAGAGCAGATATCAGCAGATAAATTAATGCAGTATGAGTTCCT
GGGGGAGCTGGCCCTGACGGGTGCGCTACGGAGCGTACAGGGCGCCATTCCGGCAGCAATGGCCGCGATCGCTGACCAGC
GGCAACTTATTCTTTCTACGGACAATCATCAGGATGCTGGATTAATTCATCATGGGCAAAGTCTTGTTGCGGCCAATCTG
CTTGAGGTCTGCGCCTTTCTTAATGGCCAGTCGCCGTTGGAAGTTGCATATTGCCATCTGGATCAGCCTCCCGCTTCTTC
AGGCGATCTTAATGAAATTATTGGACAACAGCAGGCGAAAAGAGCATTAGAAATCACTGCGGCTGGAGGCCATAATTTAT
TGTTGATCGGCCCGCCAGGTACGGGTAAAACAATGTTAGCTAATCGGCTAAATGGCTTGCTTCCGCCTCTTAACGATCGT
GAAGCTCTGGAAAGCGCCGCTATAGCCAGCCTGGTCAGTTCCCCTCTGCTGCATCAGCAATGGCGCCAGCGCCCGTTCAG
GGCACCTCACCACACCTCGTCGAGCTATGCTCTGGTCGGCGGGGGAGCCATACCAAAACCCGGTGAAATTTCGCTGGCTC
ATAATGGCGTGTTATTTCTGGATGAGCTTCCTGAATTTGCACGTAAAACCCTGGATGCGCTGAGAGAACCTATTGAATCA
GGAAAAATCAGTCTGTCACGCGCACGGGCTAAAATCACTTATCCCGCCTGCTTTCAACTGGTTGCGGCGATGAATCCCAG
CCCGACTGGACACCATAGCGGGTCGCATAGTCGTAGTACGCCTCAGCAGACACTACGCTACCTCAGCCGTCTCTCTGGCC
CTTTCCTCGACCGCTTTGACCTGTCGCTTGAAGTGCCTCTTCTTCCCTCCGGTACGCTGAGCGGTAAGCGTAAGGAAAGT
GAGTCCAGCGCAACCGTCCGGCAACGCGTTTTGGCAGCCCGCGAGGTTCAACTGAAACGAGCAGGCATGATTAACGGCGC
TCTGGGACCAAAAGAGATCCGATGCTACTGTGAGATAGAGAGGGAAGATGCGCAATGGCTCGAAGATGTGCTCAACCATC
TTGGACTCTCCGTACGCGCATGGCAACGTATCCTGAAAGTTGCCCGAACTATTGCTGATTTGGCGGGCGTGGAGAACGTA
CAACGCATCCATCTGAATGAAGCGCTAAGCTATAGAGGGATCGACAGATTGCTGATTAATTTACTGAAGAGTTTGGATTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.253

100

0.623
  comM Glaesserella parasuis strain SC1401

61.341

100

0.615
  comM Vibrio cholerae strain A1552

60.757

99.209

0.603
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

49.402

99.209

0.49
  comM Legionella pneumophila strain ERS1305867

49.402

99.209

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.257

100

0.453

Multiple sequence alignment