Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACNR93_RS08920 Genome accession   NZ_CP184736
Coordinates   1815858..1816451 (-) Length   197 a.a.
NCBI ID   WP_024344431.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810858..1821451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08900 (ACNR93_08900) recA 1811369..1812523 (-) 1155 WP_004233517.1 recombinase RecA Machinery gene
  ACNR93_RS08905 (ACNR93_08905) cinA 1812573..1813832 (-) 1260 WP_420543620.1 competence/damage-inducible protein A Machinery gene
  ACNR93_RS08910 (ACNR93_08910) - 1813946..1815148 (-) 1203 WP_420543621.1 MFS transporter -
  ACNR93_RS08915 (ACNR93_08915) - 1815271..1815828 (-) 558 WP_198362632.1 DNA-3-methyladenine glycosylase I -
  ACNR93_RS08920 (ACNR93_08920) ruvA 1815858..1816451 (-) 594 WP_024344431.1 Holliday junction branch migration protein RuvA Machinery gene
  ACNR93_RS08925 (ACNR93_08925) hexB 1816452..1818395 (-) 1944 WP_420543622.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACNR93_RS08930 (ACNR93_08930) hexA 1818509..1821079 (-) 2571 WP_420543623.1 DNA mismatch repair protein MutS Machinery gene
  ACNR93_RS08935 (ACNR93_08935) - 1821066..1821419 (-) 354 WP_027968295.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21727.16 Da        Isoelectric Point: 5.0719

>NTDB_id=988947 ACNR93_RS08920 WP_024344431.1 1815858..1816451(-) (ruvA) [Streptococcus equinus strain NM-2-29]
MYDYIKGKLTKITAKYIVVEAGGLGYIINVANPYSFSDLMNQDVQIYLHQVVREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKTAQQMVLDLAGKFADVSMENGLASQAKAVANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=988947 ACNR93_RS08920 WP_024344431.1 1815858..1816451(-) (ruvA) [Streptococcus equinus strain NM-2-29]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCAAAATATATTGTCGTTGAAGCTGGAGGATTAGGCTACAT
TATCAACGTTGCTAATCCATACAGTTTTTCTGACTTGATGAATCAAGATGTTCAAATCTACCTTCATCAAGTTGTTCGAG
AAGATGCACAGCTTTTGTTTGGCTTTCATACAGAAGATGAAAAAGCAGTCTTTCTTAACCTTATTTCAGTTTCTGGAATT
GGTCCGACAACAGCGCTAGCGATTATCGCAGTGGATGATAATGAAGGTCTCGTAACTGCTATTGACAATAGTGATATTCG
TTATCTGATGAAATTTCCAAAGATCGGTAAAAAAACAGCTCAACAAATGGTGCTTGATTTAGCTGGTAAGTTTGCTGATG
TTTCTATGGAAAATGGCTTAGCTTCTCAGGCAAAAGCAGTGGCAAACGAACAGCTTGAAGAGGCCATGGAAGCTCTTTTG
GCACTTGGCTACAAGGCAGCAGAACTTAAGAAAATTCGCAAGTTCTTTGAAGGTACAAATGAAACCGCAGAACAATACAT
TAAATCAAGCCTTAAGATGTTGATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.687

100

0.69
  ruvA Streptococcus pneumoniae D39

68.687

100

0.69
  ruvA Streptococcus pneumoniae TIGR4

68.687

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.365

100

0.437

Multiple sequence alignment