Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAFF19_RS02300 Genome accession   NZ_CP152407
Coordinates   505226..506617 (-) Length   463 a.a.
NCBI ID   WP_342721198.1    Uniprot ID   -
Organism   Acidovorax sp. FHTAMBA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 500226..511617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS02280 (AAFF19_02280) - 500625..502520 (-) 1896 WP_342721194.1 feruloyl-CoA synthase -
  AAFF19_RS02285 (AAFF19_02285) - 502685..503470 (-) 786 WP_342721195.1 crotonase/enoyl-CoA hydratase family protein -
  AAFF19_RS02290 (AAFF19_02290) - 503631..504554 (+) 924 WP_342721196.1 amidohydrolase family protein -
  AAFF19_RS02295 (AAFF19_02295) - 504555..505064 (-) 510 WP_342721197.1 MarR family transcriptional regulator -
  AAFF19_RS02300 (AAFF19_02300) comM 505226..506617 (-) 1392 WP_342721198.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAFF19_RS02305 (AAFF19_02305) - 506658..508550 (+) 1893 WP_342721199.1 hypothetical protein -
  AAFF19_RS02310 (AAFF19_02310) - 508477..510828 (+) 2352 WP_342721200.1 hypothetical protein -
  AAFF19_RS02315 (AAFF19_02315) - 510818..511528 (+) 711 WP_342721201.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48345.20 Da        Isoelectric Point: 9.1708

>NTDB_id=988911 AAFF19_RS02300 WP_342721198.1 505226..506617(-) (comM) [Acidovorax sp. FHTAMBA]
MKIYPVHFRKATSSSTVNLAPADLPKDSGRFDLPIALGILAASGQVDGARLAGYEFAGELSLSGELRPVRGALATSLALQ
TQQITAQLVLPPGSAEEAALVPAAQVVRARHLLDVVRAFLPPGSVAAGDADVANDGWTRLQATPMATSTAGPDMADVKGQ
SSAKRALEIAAAGGHSVLMAGPPGSGKSMLALRFAGLLPAMTVDEALESAAIASLAGRFHTDRWGQRPTAAPHHTASAVA
LVGGGSPPRPGEISLAHNGVLFLDEMPEFPRAALEALREPLETGHITISRAAQRADFPARFQMIAAMNPCPCGYLGSTQR
ACRCTPDQINRYQSKLSGPLLDRIDLHVEVPAVPADQLVQAPAGEATGAIRERVARARAVALARQGTTNQALQGQAIDTH
LLLDDAAAKFLNTAAARLGWSARSTHRALKVARTIADLAGATTTQVSHVAEAVQYRRVLRSPV

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=988911 AAFF19_RS02300 WP_342721198.1 505226..506617(-) (comM) [Acidovorax sp. FHTAMBA]
TTGAAAATCTACCCTGTACATTTCCGTAAGGCTACATCGTCGAGTACCGTCAACCTCGCCCCCGCAGATTTGCCCAAGGA
TTCCGGCCGGTTTGACCTGCCCATAGCGCTGGGCATCCTGGCCGCCAGCGGGCAGGTGGACGGGGCGCGGCTGGCGGGCT
ACGAGTTTGCGGGCGAGCTGTCGCTGTCGGGCGAGCTGCGCCCCGTGCGCGGCGCACTGGCCACCAGCCTGGCGCTGCAG
ACGCAGCAGATCACCGCGCAGCTGGTGCTGCCCCCGGGCAGCGCCGAAGAGGCCGCACTGGTGCCCGCAGCGCAGGTGGT
GCGGGCGCGGCACCTGCTGGACGTGGTGCGCGCCTTCCTGCCGCCGGGCAGCGTGGCGGCGGGCGATGCCGATGTGGCCA
ACGACGGCTGGACACGCCTGCAGGCCACCCCCATGGCCACCAGCACCGCAGGGCCGGACATGGCCGACGTAAAGGGGCAG
TCCAGCGCCAAACGCGCGCTGGAGATCGCAGCCGCGGGCGGCCACAGCGTGCTGATGGCCGGGCCGCCAGGCTCGGGCAA
GTCGATGCTGGCGCTGCGATTTGCCGGCCTGCTGCCCGCCATGACCGTGGACGAGGCGCTGGAGAGCGCCGCCATTGCCA
GCCTGGCCGGGCGCTTTCATACCGACCGATGGGGGCAGCGGCCCACGGCAGCACCGCACCACACGGCGAGTGCGGTGGCG
CTGGTGGGGGGCGGCTCGCCCCCGCGGCCGGGCGAAATATCGCTGGCGCACAACGGTGTCCTGTTTCTCGACGAAATGCC
CGAATTCCCGCGCGCTGCGCTGGAAGCGCTGCGCGAGCCGCTGGAGACCGGCCACATCACCATCTCCCGGGCGGCGCAGC
GTGCGGACTTCCCAGCCCGGTTCCAGATGATTGCGGCGATGAACCCGTGCCCGTGTGGCTACCTGGGCTCCACCCAGCGC
GCCTGCCGCTGCACGCCCGATCAGATCAACCGCTACCAGTCCAAGCTCAGCGGGCCGCTGCTGGACCGCATTGACCTGCA
TGTGGAGGTGCCGGCCGTGCCCGCCGACCAGCTGGTGCAAGCCCCCGCCGGCGAGGCCACCGGGGCCATCCGCGAGCGCG
TGGCGCGCGCACGGGCGGTGGCGCTGGCACGCCAGGGCACCACCAACCAGGCGCTGCAGGGGCAGGCCATCGACACCCAC
CTGCTGCTGGATGACGCGGCCGCCAAGTTCCTCAACACCGCCGCCGCGCGCCTGGGCTGGTCGGCACGCAGCACGCACCG
CGCGCTGAAGGTGGCACGCACCATTGCCGACCTGGCGGGTGCCACCACCACGCAGGTGAGCCATGTGGCCGAGGCCGTGC
AGTACCGCCGGGTGCTGCGCAGCCCCGTGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(10-91)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(365-456)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(153-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.787

96.112

0.488
  comM Vibrio campbellii strain DS40M4

49.345

98.92

0.488
  comM Haemophilus influenzae Rd KW20

47.948

100

0.479
  comM Glaesserella parasuis strain SC1401

49.55

95.896

0.475
  comM Legionella pneumophila str. Paris

46.467

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.467

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.681

97.408

0.425

Multiple sequence alignment