Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACNR93_RS02440 Genome accession   NZ_CP184736
Coordinates   467376..468041 (+) Length   221 a.a.
NCBI ID   WP_420543815.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462376..473041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS02415 (ACNR93_02415) - 462540..463940 (+) 1401 WP_029876003.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACNR93_RS02420 (ACNR93_02420) - 463940..464296 (+) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -
  ACNR93_RS02425 (ACNR93_02425) cysK 464370..465299 (-) 930 WP_420543812.1 cysteine synthase A -
  ACNR93_RS02430 (ACNR93_02430) - 465397..466023 (-) 627 WP_420543813.1 YigZ family protein -
  ACNR93_RS02435 (ACNR93_02435) comFA/cflA 466078..467376 (+) 1299 WP_420543814.1 DEAD/DEAH box helicase Machinery gene
  ACNR93_RS02440 (ACNR93_02440) comFC/cflB 467376..468041 (+) 666 WP_420543815.1 ComF family protein Machinery gene
  ACNR93_RS02445 (ACNR93_02445) hpf 468118..468666 (+) 549 WP_024344660.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25055.11 Da        Isoelectric Point: 9.2221

>NTDB_id=988873 ACNR93_RS02440 WP_420543815.1 467376..468041(+) (comFC/cflB) [Streptococcus equinus strain NM-2-29]
MGKCLLCDQLFLEKETFLGIISIQKRQNNVCPDCLGAFEKIGDKHCPTCYRNGCETQCKDCQKWEKEGHSVKHQAIFTYN
AAMKKFFSKYKFQGDVALGAIFSRDLKKKIKPYKNYSIVPVPLSKERMAECKFNQVTALLDASGVAYEEILSKKNIAKQS
DKNRKERLESQCPFQVIPGSNISKNILIIDDIYTTGATLKGIYQLLYENGAQNVKSLTIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=988873 ACNR93_RS02440 WP_420543815.1 467376..468041(+) (comFC/cflB) [Streptococcus equinus strain NM-2-29]
ATGGGAAAATGTTTGCTATGTGACCAATTATTTCTTGAAAAAGAAACTTTTTTGGGTATCATTTCTATTCAAAAAAGACA
AAATAACGTTTGTCCTGATTGTCTTGGTGCATTTGAAAAAATAGGAGATAAGCACTGTCCAACTTGTTATCGAAATGGTT
GTGAGACACAGTGTAAAGACTGTCAAAAATGGGAAAAGGAGGGGCACTCTGTCAAACATCAGGCAATTTTTACCTATAAT
GCTGCCATGAAAAAATTTTTTTCAAAGTACAAATTTCAAGGAGACGTAGCGCTCGGGGCAATTTTTTCTAGAGATCTTAA
GAAAAAAATCAAGCCCTACAAAAATTACAGTATTGTGCCAGTGCCTTTAAGTAAAGAGCGCATGGCGGAATGCAAATTTA
ATCAAGTTACTGCCTTATTGGACGCTTCTGGAGTAGCCTATGAAGAAATTTTATCAAAGAAAAATATCGCTAAACAATCA
GATAAAAACAGAAAAGAAAGACTTGAAAGTCAGTGTCCTTTTCAAGTTATTCCCGGTAGTAATATTTCCAAAAATATTTT
AATTATTGACGATATTTATACGACTGGCGCTACTCTAAAAGGCATTTATCAGCTTCTTTATGAAAACGGTGCACAGAATG
TAAAAAGTTTAACAATTGCACGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae TIGR4

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae Rx1

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.119

99.095

0.457
  comFC/cflB Streptococcus mitis NCTC 12261

45.662

99.095

0.452
  comFC Bacillus subtilis subsp. subtilis str. 168

36.123

100

0.371