Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAGQ88_RS26045 Genome accession   NZ_CP152388
Coordinates   5833320..5834813 (+) Length   497 a.a.
NCBI ID   WP_342654001.1    Uniprot ID   -
Organism   Pseudomonas sp. F3-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5828320..5839813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ88_RS26015 (AAGQ88_26015) sutA 5828390..5828719 (-) 330 WP_093466065.1 transcriptional regulator SutA -
  AAGQ88_RS26020 (AAGQ88_26020) - 5828813..5829244 (-) 432 WP_093466068.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AAGQ88_RS26025 (AAGQ88_26025) - 5829494..5830831 (-) 1338 WP_093466071.1 ammonium transporter -
  AAGQ88_RS26030 (AAGQ88_26030) glnK 5830865..5831203 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  AAGQ88_RS26035 (AAGQ88_26035) - 5831623..5831886 (+) 264 WP_093466074.1 accessory factor UbiK family protein -
  AAGQ88_RS26040 (AAGQ88_26040) - 5832022..5833032 (-) 1011 WP_342654000.1 heparin lyase I family protein -
  AAGQ88_RS26045 (AAGQ88_26045) comM 5833320..5834813 (+) 1494 WP_342654001.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAGQ88_RS26050 (AAGQ88_26050) - 5834873..5835172 (+) 300 WP_285422931.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  AAGQ88_RS26055 (AAGQ88_26055) - 5835159..5835446 (+) 288 WP_342654002.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAGQ88_RS26060 (AAGQ88_26060) - 5835492..5837468 (-) 1977 WP_342654003.1 methyl-accepting chemotaxis protein -
  AAGQ88_RS26065 (AAGQ88_26065) - 5837675..5838595 (-) 921 WP_093466190.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53044.96 Da        Isoelectric Point: 7.5651

>NTDB_id=988850 AAGQ88_RS26045 WP_342654001.1 5833320..5834813(+) (comM) [Pseudomonas sp. F3-2]
MSLAIVLSRAQVGVEAPAVTVETHLANGLPTLTLVGLPEGAVKESKDRVRSAIVNCRLEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASAQVPTLALDGVECLGELALSGAIRPVQGVLPAALAARAAGHTLIVPAVNAEEACLASGLKVIAVSHL
LELVAHLNGHTVIPPYKSNGLILKTQPYPDLSEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
FEALEVAAIQSVASHEPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYHGEPTGRCRCSTDQIQRYRNKLSGPLLDRIDLHLTVARETTSLAATTHA
EETSASAAQTVSGARERQHKRQGCANAFLDLPALRQHCALLPEDETWLENACERLNLSLRAAHRLLKVARTLADLEHVDA
ISRSHIAEALQYRPTTG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=988850 AAGQ88_RS26045 WP_342654001.1 5833320..5834813(+) (comM) [Pseudomonas sp. F3-2]
ATGTCGCTCGCTATCGTTCTGAGCCGCGCCCAAGTCGGCGTCGAGGCTCCCGCCGTCACAGTCGAGACGCACCTGGCCAA
CGGTTTGCCGACCCTGACGCTGGTGGGCTTACCCGAGGGCGCAGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCCATCG
TCAACTGTCGACTGGAATTCCCGGCGCGGCGCATCACCTTGAATCTGGCGCCCGCCGATCTGCCCAAGGACGGCGGGCGT
TTCGACCTGGCCATTGCTCTCGGACTTCTTGCCGCCAGCGCGCAGGTGCCGACCCTCGCCCTGGACGGCGTCGAATGCCT
GGGTGAGCTTGCACTGTCTGGTGCCATACGCCCCGTTCAAGGCGTTTTACCCGCCGCGCTGGCTGCAAGGGCCGCCGGGC
ACACGTTGATCGTGCCAGCCGTCAATGCCGAAGAAGCGTGCCTGGCGTCCGGCCTCAAAGTGATCGCAGTCAGTCATCTG
CTCGAGCTGGTGGCCCATCTGAATGGCCACACCGTCATCCCGCCGTACAAATCCAACGGTTTGATTCTCAAGACGCAACC
CTATCCCGACCTGAGCGAGGTACAAGGGCAGACCGCCGCCAAACGCGCTCTGCTGATCGCGGCAGCGGGCGCCCACAATC
TGCTGTTCAGCGGCCCTCCCGGCACGGGTAAAACGCTGCTCGCCAGTCGCTTGCCGGGGTTGCTGCCCCCGCTCGACGAG
TTCGAGGCACTGGAGGTCGCGGCGATTCAATCGGTCGCCAGCCATGAGCCGCTGACGAGCTGGCCACAGCGACCTTTCCG
TCAGCCTCATCACTCGGCATCCGGCCCTGCCCTAGTGGGAGGAGGCAGCCGGCCGCAACCCGGCGAAATCACCCTGGCTC
ATCACGGCGTGCTGTTTCTCGATGAGCTCCCGGAGTTCGACCGCCGCGTGCTGGAGGTTTTGCGAGAGCCCCTGGAATCG
GGTCATATCGTCATTTCCCGCGCGCGCGATCGCGTGCGGTTTCCGGCGCGGTTTCAACTGGTCGCCGCGATGAATCCCTG
CCCATGCGGCTATCACGGCGAGCCGACCGGCCGCTGCCGCTGCTCGACCGACCAGATCCAGCGTTATCGCAACAAGTTGT
CTGGCCCGCTGCTTGACCGGATCGATCTGCACCTGACCGTCGCACGGGAAACCACGTCGCTTGCAGCCACTACGCACGCT
GAAGAAACCAGCGCCAGCGCCGCGCAGACGGTGTCCGGCGCGCGCGAACGACAACACAAGCGTCAAGGCTGCGCCAATGC
TTTTCTCGATCTTCCGGCCCTGCGCCAGCATTGCGCACTGCTGCCTGAGGACGAGACCTGGCTTGAAAATGCCTGCGAAC
GCTTGAACCTCTCCCTGCGTGCGGCCCACCGGCTGCTGAAGGTCGCGCGCACGCTCGCCGATCTGGAGCACGTGGATGCC
ATTTCCCGAAGTCACATCGCCGAAGCTTTGCAGTACAGGCCAACCACTGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Haemophilus influenzae Rd KW20

54.2

100

0.545
  comM Glaesserella parasuis strain SC1401

53.6

100

0.539
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Legionella pneumophila str. Paris

49.798

99.799

0.497
  comM Legionella pneumophila strain ERS1305867

49.798

99.799

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.463

Multiple sequence alignment