Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAGF34_RS09545 | Genome accession | NZ_CP152376 |
| Coordinates | 2026950..2027462 (+) | Length | 170 a.a. |
| NCBI ID | WP_342620379.1 | Uniprot ID | - |
| Organism | Rhodoferax sp. GW822-FHT02A01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2021950..2032462
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGF34_RS09535 (AAGF34_09535) | - | 2022092..2023387 (+) | 1296 | WP_342620378.1 | FAD/NAD(P)-binding oxidoreductase | - |
| AAGF34_RS09540 (AAGF34_09540) | uvrA | 2023718..2026741 (-) | 3024 | WP_342621070.1 | excinuclease ABC subunit UvrA | - |
| AAGF34_RS09545 (AAGF34_09545) | ssb | 2026950..2027462 (+) | 513 | WP_342620379.1 | single-stranded DNA-binding protein | Machinery gene |
| AAGF34_RS09550 (AAGF34_09550) | - | 2027645..2027866 (+) | 222 | WP_342620380.1 | hypothetical protein | - |
| AAGF34_RS09555 (AAGF34_09555) | - | 2027879..2028646 (-) | 768 | WP_342620381.1 | Crp/Fnr family transcriptional regulator | - |
| AAGF34_RS09560 (AAGF34_09560) | mnmA | 2028692..2029792 (-) | 1101 | WP_342620382.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| AAGF34_RS09565 (AAGF34_09565) | - | 2029802..2030308 (-) | 507 | WP_342620383.1 | NUDIX hydrolase | - |
| AAGF34_RS09570 (AAGF34_09570) | - | 2030431..2031561 (+) | 1131 | WP_342620384.1 | Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha | - |
| AAGF34_RS09575 (AAGF34_09575) | - | 2031588..2031914 (+) | 327 | WP_342619644.1 | NAD(P) transhydrogenase subunit alpha | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18152.32 Da Isoelectric Point: 5.9623
>NTDB_id=988744 AAGF34_RS09545 WP_342620379.1 2026950..2027462(+) (ssb) [Rhodoferax sp. GW822-FHT02A01]
MASVNKVILVGNCGRDPEIRYLPSGQAVANVSIATTSRRKDRTSGEFVEETQWHRVTFFERLAEIVGEYVKKGTPIYVEG
RLSYRKYTDKDGIEKNATDIVASEMQLLGARQGMGGPGAGDGYGDEGGAPAAPARRPAPAAARPAAPAARQAPAPRPASG
FDDMDDDIPF
MASVNKVILVGNCGRDPEIRYLPSGQAVANVSIATTSRRKDRTSGEFVEETQWHRVTFFERLAEIVGEYVKKGTPIYVEG
RLSYRKYTDKDGIEKNATDIVASEMQLLGARQGMGGPGAGDGYGDEGGAPAAPARRPAPAAARPAAPAARQAPAPRPASG
FDDMDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=988744 AAGF34_RS09545 WP_342620379.1 2026950..2027462(+) (ssb) [Rhodoferax sp. GW822-FHT02A01]
ATGGCATCCGTTAACAAAGTCATTCTGGTCGGCAATTGTGGCCGCGACCCCGAAATCCGCTACTTGCCGTCCGGGCAGGC
CGTTGCCAATGTGAGCATCGCCACCACCAGCCGTCGCAAAGACAGGACCAGCGGCGAGTTCGTTGAAGAAACCCAGTGGC
ACCGCGTCACCTTCTTTGAGCGTCTGGCCGAGATCGTGGGCGAATACGTGAAGAAGGGCACCCCCATCTATGTGGAGGGC
CGTCTGAGCTATCGCAAATACACCGACAAGGACGGCATCGAAAAGAACGCCACCGACATCGTGGCCTCCGAAATGCAGCT
GCTCGGCGCTCGCCAAGGCATGGGTGGCCCTGGTGCGGGTGACGGTTATGGTGATGAAGGCGGTGCCCCTGCCGCCCCCG
CCCGCCGCCCGGCACCCGCCGCTGCCCGTCCAGCCGCGCCTGCGGCACGCCAGGCCCCGGCTCCACGCCCGGCCAGCGGT
TTTGACGACATGGATGACGATATACCGTTCTGA
ATGGCATCCGTTAACAAAGTCATTCTGGTCGGCAATTGTGGCCGCGACCCCGAAATCCGCTACTTGCCGTCCGGGCAGGC
CGTTGCCAATGTGAGCATCGCCACCACCAGCCGTCGCAAAGACAGGACCAGCGGCGAGTTCGTTGAAGAAACCCAGTGGC
ACCGCGTCACCTTCTTTGAGCGTCTGGCCGAGATCGTGGGCGAATACGTGAAGAAGGGCACCCCCATCTATGTGGAGGGC
CGTCTGAGCTATCGCAAATACACCGACAAGGACGGCATCGAAAAGAACGCCACCGACATCGTGGCCTCCGAAATGCAGCT
GCTCGGCGCTCGCCAAGGCATGGGTGGCCCTGGTGCGGGTGACGGTTATGGTGATGAAGGCGGTGCCCCTGCCGCCCCCG
CCCGCCGCCCGGCACCCGCCGCTGCCCGTCCAGCCGCGCCTGCGGCACGCCAGGCCCCGGCTCCACGCCCGGCCAGCGGT
TTTGACGACATGGATGACGATATACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria gonorrhoeae MS11 |
50.282 |
100 |
0.524 |
| ssb | Neisseria meningitidis MC58 |
49.714 |
100 |
0.512 |
| ssb | Vibrio cholerae strain A1552 |
44.751 |
100 |
0.476 |
| ssb | Glaesserella parasuis strain SC1401 |
39.444 |
100 |
0.418 |