Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   AAG685_RS16855 Genome accession   NZ_CP152345
Coordinates   3702729..3703052 (-) Length   107 a.a.
NCBI ID   WP_406662981.1    Uniprot ID   -
Organism   Pseudomonas indoloxydans strain SDU_PSEU1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3697729..3708052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG685_RS16840 uvrB 3698377..3700392 (-) 2016 WP_406662977.1 excinuclease ABC subunit UvrB -
  AAG685_RS16845 - 3700638..3701834 (+) 1197 WP_406662979.1 amino acid aminotransferase -
  AAG685_RS16855 comEA/comE1 3702729..3703052 (-) 324 WP_406662981.1 ComEA family DNA-binding protein Machinery gene
  AAG685_RS16860 - 3703147..3705129 (-) 1983 WP_406662983.1 polysaccharide biosynthesis protein -
  AAG685_RS16865 - 3705152..3706332 (-) 1181 Protein_3322 DegT/DnrJ/EryC1/StrS family aminotransferase -
  AAG685_RS16870 - 3706386..3707003 (-) 618 WP_406662985.1 acetyltransferase -
  AAG685_RS16875 - 3707000..3707599 (-) 600 WP_406662987.1 sugar transferase -
  AAG685_RS16880 - 3707596..3708015 (-) 420 WP_406662989.1 glycosyltransferase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11303.02 Da        Isoelectric Point: 5.1186

>NTDB_id=988535 AAG685_RS16855 WP_406662981.1 3702729..3703052(-) (comEA/comE1) [Pseudomonas indoloxydans strain SDU_PSEU1]
MLKIRFSALLFAALTTLSLAAVAAETPKAESARAPVLQLAQVAVVNLNTADAATLQRDLVGIGATKAQAIVAYREEHGKF
ASIDELLEVNGIGEATLEKNRDKLSVE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=988535 AAG685_RS16855 WP_406662981.1 3702729..3703052(-) (comEA/comE1) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGCTGAAAATCCGTTTTTCTGCACTGCTGTTCGCTGCTCTCACTACCCTCTCTCTGGCTGCGGTTGCAGCTGAAACGCC
AAAAGCCGAAAGCGCCAGGGCGCCTGTCCTTCAGTTGGCGCAGGTCGCTGTGGTCAATCTGAATACTGCTGATGCCGCTA
CGTTGCAGCGTGATCTGGTGGGGATCGGGGCGACCAAGGCGCAAGCGATCGTGGCGTATCGTGAGGAGCACGGCAAGTTC
GCTTCGATCGACGAGTTGCTGGAAGTGAATGGGATCGGTGAAGCGACGCTGGAGAAGAATCGCGACAAGTTGAGCGTTGA
ATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.321

100

0.495
  comEA Vibrio cholerae C6706

46.078

95.327

0.439
  comEA Vibrio cholerae strain A1552

46.078

95.327

0.439
  comE1/comEA Haemophilus influenzae Rd KW20

54.217

77.57

0.421
  comEA Legionella pneumophila str. Paris

38.835

96.262

0.374
  comEA Legionella pneumophila strain ERS1305867

38.835

96.262

0.374

Multiple sequence alignment