Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAG563_RS22210 Genome accession   NZ_CP152341
Coordinates   4920131..4921624 (+) Length   497 a.a.
NCBI ID   WP_007926640.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain NCIMB_15121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4915131..4926624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG563_RS22190 (AAG563_22190) - 4915510..4916238 (+) 729 WP_009046161.1 formyltransferase family protein -
  AAG563_RS22195 (AAG563_22195) - 4916235..4918637 (+) 2403 WP_009046162.1 PEP/pyruvate-binding domain-containing protein -
  AAG563_RS22200 (AAG563_22200) - 4918634..4919266 (+) 633 WP_009046163.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AAG563_RS22205 (AAG563_22205) - 4919273..4920022 (+) 750 WP_009046164.1 phosphocholine cytidylyltransferase family protein -
  AAG563_RS22210 (AAG563_22210) comM 4920131..4921624 (+) 1494 WP_007926640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAG563_RS22215 (AAG563_22215) - 4921631..4922845 (-) 1215 WP_009046165.1 aldose 1-epimerase family protein -
  AAG563_RS22220 (AAG563_22220) - 4922952..4923527 (-) 576 WP_009046166.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  AAG563_RS22225 (AAG563_22225) - 4923642..4924568 (+) 927 WP_192814732.1 ABC transporter six-transmembrane domain-containing protein -
  AAG563_RS22230 (AAG563_22230) - 4924573..4925544 (-) 972 WP_009046168.1 Ca2+-dependent phosphoinositide-specific phospholipase C -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53479.43 Da        Isoelectric Point: 8.0958

>NTDB_id=988476 AAG563_RS22210 WP_007926640.1 4920131..4921624(+) (comM) [Pseudomonas chlororaphis strain NCIMB_15121]
MSLAIVHSRAQTGVQAPAVSVEVHLANGLPALTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLALEEVECLGELALSGAVRPVRGVLPAALAARQAGRTLMVPRANAEEACLASGLKVIAVEHL
LEAVAHFNGHTPIEPYVSDGLLYQNRPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVTSHTPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDRVHFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARESTALNPKPQA
GDNTAQAAALVARARERQQRRQGCANAFLDLPGLRRHCQLSTTDERWLETACERLTLSLRAAHRLLKVARTLADLEQAEQ
ISREHLAEALQYRPAAS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=988476 AAG563_RS22210 WP_007926640.1 4920131..4921624(+) (comM) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGTCTCTGGCCATTGTCCACAGCCGTGCCCAGACCGGCGTGCAAGCGCCGGCCGTGTCGGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGGCCCTGACCCTGGTGGGCCTGCCCGAAGCGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATGCCGGCTTCGATTTTCCAGCCCGGCGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATTGCCCTGGGCATTCTCGCCGCCAGCGTGCAGGTGCCGACCCTGGCCCTGGAGGAAGTCGAATGCCT
GGGCGAGCTGGCGCTTTCCGGCGCGGTTCGTCCGGTGCGTGGTGTGCTGCCGGCAGCCCTGGCCGCGCGCCAGGCCGGAC
GCACGCTGATGGTGCCGCGCGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGACTGAAGGTGATTGCCGTCGAGCACTTG
CTGGAAGCCGTTGCGCATTTCAACGGCCATACACCGATCGAACCCTATGTTTCGGACGGCCTGCTCTACCAGAACCGGCC
CTACCCCGACCTGAATGAAGTACAGGGCCAGCTGGCCGCCAAACGCGCGCTGCTGGTGGCCGCGGCCGGTGCGCACAACC
TGCTGTTCAGTGGTCCGCCAGGCACCGGCAAGACCTTGCTGGCTAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGAGGAG
CAGGAAGCCCTGGAAGTGGCCGCCATCCAGTCGGTCACCAGCCATACTCCGCTGAGCCATTGGCCGCAGCGACCGTTTCG
CCAGCCGCACCACTCTGCGTCAGGGCCAGCCCTGGTGGGCGGAGGCTCGAAACCACAACCCGGGGAAATCACCCTGGCCC
ACCACGGTGTGCTGTTTCTCGACGAGTTGCCGGAATTCGATCGCAAGGTATTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGGCAGATCGTCATCGCCCGGGCTCGCGACCGGGTGCATTTTCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAACCCCTG
TCCCTGTGGATATCTTGGCGAACCCAGTGGCCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGTTATCGCAACAAACTCT
CCGGGCCGCTGCTCGACCGCATTGACCTGCACCTGACCGTGGCCCGGGAAAGCACCGCCCTCAACCCCAAGCCCCAGGCT
GGGGATAACACTGCGCAAGCCGCGGCCCTGGTGGCCCGCGCCAGGGAGCGGCAACAACGGCGCCAGGGTTGCGCCAATGC
TTTTCTCGACCTGCCGGGCCTGCGCCGGCATTGCCAGTTATCCACAACCGACGAGCGCTGGCTGGAAACCGCCTGCGAAC
GCCTGACCCTGTCCCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACCCTGGCGGACCTCGAGCAGGCCGAGCAG
ATCAGCCGCGAGCACCTGGCCGAAGCGCTGCAATACCGGCCGGCCGCGAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Legionella pneumophila str. Paris

49.194

99.799

0.491
  comM Legionella pneumophila strain ERS1305867

49.194

99.799

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.471

Multiple sequence alignment