Detailed information NTG0988435

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AAG562_RS04960
• Genome accession: NZ_CP152340
• Coordinates: 1064631..1065776 (+)
• Length: 381 a.a.
• NCBI ID: WP_003282740.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain NCIMB_885
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1059631..1070776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG562_RS04940 (AAG562_04940)	-	1061320..1061910 (-)	591	WP_003282747.1	YggT family protein	-
AAG562_RS04945 (AAG562_04945)	proC	1061920..1062744 (-)	825	WP_003282745.1	pyrroline-5-carboxylate reductase	-
AAG562_RS04950 (AAG562_04950)	-	1062755..1063444 (-)	690	WP_003282744.1	YggS family pyridoxal phosphate-dependent enzyme	-
AAG562_RS04955 (AAG562_04955)	pilT	1063511..1064545 (+)	1035	WP_003282742.1	type IV pilus twitching motility protein PilT	Machinery gene
AAG562_RS04960 (AAG562_04960)	pilU	1064631..1065776 (+)	1146	WP_003282740.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
AAG562_RS04965 (AAG562_04965)	-	1065773..1066609 (-)	837	WP_003282739.1	TIGR03915 family putative DNA repair protein	-
AAG562_RS04970 (AAG562_04970)	-	1066609..1067820 (-)	1212	WP_003282738.1	putative DNA modification/repair radical SAM protein	-
AAG562_RS04975 (AAG562_04975)	-	1067954..1068349 (+)	396	WP_003282737.1	TM2 domain-containing protein	-
AAG562_RS04980 (AAG562_04980)	-	1068423..1069697 (-)	1275	WP_003282736.1	dihydroorotase	-
AAG562_RS04985 (AAG562_04985)	-	1069697..1070713 (-)	1017	WP_003282735.1	aspartate carbamoyltransferase catalytic subunit	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42499.79 Da
• Isoelectric Point: 6.8856

>NTDB_id=988435 AAG562_RS04960 WP_003282740.1 1064631..1065776(+) (pilU) [Stutzerimonas stutzeri strain NCIMB_885]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTAMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTIDELKLPDVLKKLSMTKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIED
PIEFIHQHQSCIVTQREVGIDTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKSLMKRSTELGMQTFDQA
LYNLYVQGEITYEDALLHADSANDLRLLIKLGSETDGEHLTSVSQGLSLEVSDEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=988435 AAG562_RS04960 WP_003282740.1 1064631..1065776(+) (pilU) [Stutzerimonas stutzeri strain NCIMB_885]
ATGGAATTCGAGAAACTTCTGCGCCTGATGGTTGAAAAGGGCGGCTCCGATCTGTTCATTACGGCCGGCGTGCCACCTTC
AATGAAGGTCAACGGCAAGATCATGCCGGTTAGCAAGACAGCGATGTCCCCGGAGATGACCCGGGAAACCGTGCATGGCG
TGATGAACGAGCAGCAGCGCCGCGAGTTCACCGAGAATCACGAGTGCAACTTCGCCATCAGTGCCCGTGGTATCGGCCGC
TTCCGTGTCAGCGCCTTTTACCAGCGCAACCTCGCCGGAATGGTGTTGCGGCGCATCGAGACCAACATTCCCACTATCGA
TGAGCTCAAGCTGCCGGACGTCCTCAAGAAGCTGTCGATGACCAAACGCGGACTGGTGCTGTTCGTTGGCGCCACCGGTA
CCGGCAAGTCGACTTCATTGGCTTCGATGATTGGCTACCGCAACAAGAATTCCAGCGGGCACATCATTTCTATCGAGGAC
CCGATCGAATTCATCCACCAGCACCAGAGTTGCATCGTCACCCAGCGCGAAGTCGGTATCGATACCAGCTCGTTCGAGGT
AGCACTGAAGAACACCCTGCGCCAGGCGCCAGACGTGATCCTCATCGGTGAGATTCGTACCCGCGAAACCATGGACTACG
CCGTGGCGTTCGCCGAAACTGGCCACCTGTGCCTGGCGACGCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATTAACTTCTTCCCGCCTGATCGGCATAACCAGGTGTGGATGGATCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
GCTGGTGCCGACCCCTGACGGCAAGGGCCGTCGTGCGGTGATCGAGGTGCTGATCAATACGCCGTTGGCGGCCGATCTGA
TTCGCAAGGGCGAGGTGCATGAACTCAAGTCGCTGATGAAGCGCTCGACCGAATTGGGCATGCAGACCTTCGATCAGGCG
CTATACAACCTCTATGTGCAGGGTGAAATCACCTACGAAGACGCGCTTTTGCATGCCGACTCGGCCAACGACCTGCGCCT
GCTGATCAAGCTGGGTTCGGAAACCGATGGTGAGCATCTGACCAGCGTGTCGCAAGGCCTGAGTCTGGAGGTCAGCGACG
AGGATCCAGGCCGCCGCTTCCGCTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	94.226	100	0.942
pilU	Acinetobacter baylyi ADP1	66.387	93.701	0.622
pilU	Vibrio cholerae strain A1552	59.429	91.864	0.546
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.658	88.976	0.388