Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOB87_RS13245 Genome accession   NZ_CP184648
Coordinates   3136803..3138428 (-) Length   541 a.a.
NCBI ID   WP_420310636.1    Uniprot ID   -
Organism   Streptomyces sp. YS-B37     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3131803..3143428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB87_RS13225 (ACOB87_13225) - 3132732..3133325 (+) 594 WP_401329905.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACOB87_RS13230 (ACOB87_13230) - 3133375..3133932 (-) 558 WP_352284488.1 TetR/AcrR family transcriptional regulator -
  ACOB87_RS13235 (ACOB87_13235) whiG 3134051..3134893 (-) 843 WP_328828505.1 RNA polymerase sigma factor WhiG -
  ACOB87_RS13240 (ACOB87_13240) dprA 3135166..3136326 (-) 1161 WP_328828506.1 DNA-processing protein DprA -
  ACOB87_RS13245 (ACOB87_13245) comM 3136803..3138428 (-) 1626 WP_420310636.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOB87_RS13250 (ACOB87_13250) - 3138430..3138792 (-) 363 WP_266772960.1 YraN family protein -
  ACOB87_RS13255 (ACOB87_13255) - 3138921..3139229 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  ACOB87_RS13260 (ACOB87_13260) - 3139286..3139825 (-) 540 WP_328828509.1 NUDIX hydrolase -
  ACOB87_RS13265 (ACOB87_13265) lepB 3139815..3140594 (-) 780 WP_328932418.1 signal peptidase I -
  ACOB87_RS13270 (ACOB87_13270) lepB 3140673..3141647 (-) 975 WP_420310637.1 signal peptidase I -
  ACOB87_RS13275 (ACOB87_13275) lepB 3141535..3142647 (-) 1113 WP_328828512.1 signal peptidase I -
  ACOB87_RS13280 (ACOB87_13280) lepB 3142640..3143356 (-) 717 WP_328828513.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56536.75 Da        Isoelectric Point: 6.6342

>NTDB_id=988249 ACOB87_RS13245 WP_420310636.1 3136803..3138428(-) (comM) [Streptomyces sp. YS-B37]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESKDRVRAAVVNSGCAWPQKKLTVGLSPASVPKSGSG
FDLAVAAAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADSGYEQVVVPECAAAEASLVPGVSVLGVRT
LRQLIAVLADEPVPDEEPDEPGRPDPLLAGLRLPGTGAATGMHSVGASQHDPGHDLADVVGQFSARTAVEVSAAGGHHLF
LEGPPGAGKTMLAERLPAVLPRLGRQESLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQALVGGGQGIARPGAVSL
SHRGVLFLDETPEFSGQALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQTDDLCECAPMSIRRYQAR
LSGPLLDRVDLRVEVDRVTRDQLTGRGARGESTATVAERVRAARERAAARFADTPWRTNSEVPGRELRSRWHAERGAMDE
AERSLERGALTARGLDRVLRVAWTVADLVGHDRPGATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=988249 ACOB87_RS13245 WP_420310636.1 3136803..3138428(-) (comM) [Streptomyces sp. YS-B37]
ATGGGGTTCGCTCGTACGTGTTCGGTGGCGCTGGTGGGCGTCGAGGGCGTGGTCGTCGAGGTGCAGGCCGACCTCGAACC
GGGCGTCGCCGCGTTCACGCTGGTGGGACTGCCCGACAAGAGCCTGACGGAGAGCAAGGACCGGGTGCGGGCCGCGGTCG
TCAACTCGGGCTGCGCCTGGCCGCAGAAGAAACTGACGGTGGGACTCAGCCCGGCGTCCGTCCCGAAGAGCGGCAGCGGC
TTCGACCTGGCGGTGGCCGCGGCGGTCCTGGGAGCGGCGGAACGGATCGATCCCCGGGTGCTCGCCGACATCGTGATGAT
CGGGGAGCTGGGGCTGGACGGACGGGTGCGGCCGGTCCGGGGCATCCTGCCGGCCGTATTGGCCGCCGCCGACTCCGGCT
ACGAGCAGGTCGTCGTCCCGGAATGCGCCGCGGCCGAGGCGTCCCTCGTGCCCGGGGTGTCCGTCCTGGGCGTGCGCACC
CTGCGCCAGCTGATCGCCGTGCTCGCGGACGAGCCCGTGCCCGACGAGGAGCCGGACGAGCCGGGCCGCCCCGACCCGCT
ACTCGCCGGGCTGCGCTTGCCCGGCACGGGCGCGGCCACGGGGATGCACAGTGTGGGCGCGTCCCAGCACGATCCGGGGC
ACGATCTCGCCGATGTCGTCGGGCAGTTCTCGGCGCGGACGGCGGTGGAGGTCTCGGCGGCCGGCGGTCACCATCTGTTC
CTCGAAGGCCCGCCGGGTGCTGGGAAGACGATGCTCGCGGAGCGGCTCCCGGCCGTTCTACCCCGGCTCGGCCGGCAGGA
GTCGCTTGAGGTCACGGCGGTCCACTCGGTGGCGGGCCTGCTGCCCCCGGGCAAACCCCTGATCGACGTCGCCCCCTACT
GCGCCCCGCACCACTCGGCCACGATGCAGGCCCTCGTCGGGGGCGGCCAGGGGATCGCACGGCCCGGAGCGGTGTCCCTG
TCTCACCGAGGGGTGCTTTTTCTGGACGAAACCCCCGAATTCAGCGGCCAGGCCCTCGACGCGCTACGGCAGCCGCTGGA
GGCCGGGCATGTGGTGATCGCGCGCAGTGCGGGCGTCGTGCGCTTCCCGGCGAGGTTCCTGATGGTGCTGGCCGCCAACC
CCTGTCCGTGCGGCCGTTTCTCGCAGACCGACGACCTGTGCGAGTGCGCGCCGATGTCGATCCGCCGGTACCAGGCCAGG
CTCTCCGGGCCACTGCTCGACCGGGTGGACCTCCGGGTGGAGGTGGACCGGGTCACCCGGGACCAGCTCACCGGGCGCGG
TGCGCGGGGCGAGTCCACGGCGACGGTCGCGGAACGGGTGCGGGCGGCCAGGGAGCGGGCGGCGGCCCGGTTCGCGGACA
CACCCTGGCGCACCAACAGCGAGGTGCCCGGCCGCGAACTGCGCAGCCGCTGGCACGCCGAGCGCGGCGCGATGGACGAG
GCCGAGCGCAGCCTGGAGCGCGGCGCGCTCACCGCGCGCGGACTCGACCGGGTGCTGCGGGTCGCCTGGACGGTCGCCGA
CCTGGTCGGCCACGACCGCCCCGGCGCGACGGACGTCGCCTTGGCGCTCCAACTCCGCACGGGTGTACCGCGGGGCGTGC
CGATGGCTATCGGGGCGCTGACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.658

97.412

0.386
  comM Vibrio cholerae strain A1552

39.658

97.412

0.386
  comM Vibrio campbellii strain DS40M4

39.354

97.227

0.383
  comM Haemophilus influenzae Rd KW20

37.925

97.967

0.372
  comM Acinetobacter baylyi ADP1

39.335

94.455

0.372
  comM Glaesserella parasuis strain SC1401

37.1

98.152

0.364
  comM Legionella pneumophila str. Paris

36.654

98.336

0.36
  comM Legionella pneumophila strain ERS1305867

36.654

98.336

0.36

Multiple sequence alignment