Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAD080_RS00130 Genome accession   NZ_CP152307
Coordinates   27392..28915 (+) Length   507 a.a.
NCBI ID   WP_342607826.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 22392..33915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS00115 ilvD 22902..24743 (-) 1842 WP_342607824.1 dihydroxy-acid dehydratase -
  AAD080_RS00120 ilvM 24967..25251 (-) 285 WP_068711299.1 acetolactate synthase 2 small subunit -
  AAD080_RS00125 ilvG 25262..26908 (-) 1647 WP_342607825.1 acetolactate synthase 2 catalytic subunit -
  AAD080_RS00130 comM 27392..28915 (+) 1524 WP_342607826.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAD080_RS00135 - 29005..29889 (+) 885 WP_342607827.1 acyltransferase -
  AAD080_RS00140 ltrA 30663..31946 (+) 1284 WP_342607551.1 group II intron reverse transcriptase/maturase -
  AAD080_RS00145 - 32038..32637 (-) 600 WP_068711307.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAD080_RS00150 - 32678..33664 (-) 987 WP_342607828.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55196.19 Da        Isoelectric Point: 7.5331

>NTDB_id=988212 AAD080_RS00130 WP_342607826.1 27392..28915(+) (comM) [Vibrio tritonius strain JCM 16457 isolate MA35]
MGLAIIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIVNSNFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAAAEQIPATHLDGYEFLGELALSGDLRPVKGVLPAALAANREKRCLIVPDENGDQAALVGKDTHKSAQTL
LDVCAQLCGQKNLSLFQTNTPITASDSTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPQMSD
DEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQVILRYLSRLSGPLLDRFDMSIEIPALPQGTLANGGDR
GESTQEVRLRVLQAREVMLARSGKVNALLQSREIERYCQLEKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGKDR
IQRVHLAEALGYRAMDRLLKQLTAQSI

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=988212 AAD080_RS00130 WP_342607826.1 27392..28915(+) (comM) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGGGACTGGCGATTATCCACAGTCGAGCAAGTGTTGGGGTAGAAGCCCCTTCTGTTACTGTGGAAGTGCATATCAGCAA
TGGTATGCCTGGGTTTACCCTTGTGGGGCTTCCGGAAACCACCGTAAAAGAGTCGCGTGATCGAGTGCGCAGTGCCATTG
TTAACTCCAATTTTGAGTTTCCCGCCAAAAGAATCACGGTCAATTTGGCACCTGCGGATCTTCCTAAAGAGGGAGGTCGT
TTTGATCTGCCAATTGCATTAGGGATTTTGGCTGCGGCAGAACAAATTCCGGCAACTCATTTAGATGGCTATGAGTTTTT
AGGGGAGCTAGCACTGTCGGGCGATTTACGTCCAGTGAAAGGCGTGTTGCCTGCTGCTCTAGCGGCTAACCGCGAGAAGC
GCTGTTTAATTGTTCCAGATGAAAATGGCGATCAAGCAGCGTTAGTTGGTAAGGATACCCATAAGTCGGCGCAAACTCTT
TTAGATGTGTGCGCGCAGTTATGCGGACAGAAAAACTTATCGTTGTTTCAAACCAATACGCCGATAACAGCATCCGACTC
AACGCGAGACTTGCAAGATATTATTGGTCAGCAACAAGGCAAGCGAGCTTTGGAAATTGCTGCAGCAGGTAATCATAATT
TGCTTTTTCTGGGGCCTCCTGGCACAGGGAAAACCATGTTGGCTTCGCGCCTTTGCGATCTGTTACCACAAATGAGTGAT
GATGAAGCGATGGAGACCGCGTCAGTTGCATCCCTTACTCAGCAAGAGATCAATCAACATAACTGGAAGCAGAGACCGTT
TCGTGCGCCCCATCATTCAAGTTCCATGGCTGCTTTGGTTGGGGGAGGAACCATCCCCAGGCCCGGAGAGATTTCTCTTG
CACATAACGGACTGCTTTTCTTGGATGAGATGCCAGAGTTTGAACGTAAGGTGCTCGATTCATTGCGTGAGCCACTTGAG
TCAGGAGAAATTATCATTTCACGAGCTCAGGGTAAGACACGGTTTCCTGCTCGTTTTCAGCTAGTGGGTGCACTCAATCC
TAGTCCTACAGGCTATTATGAGGGCAATCAGGCACGAGCTAATCCGCAGGTGATTCTGCGTTACCTTAGCCGTTTATCTG
GCCCGCTTTTGGATAGATTTGATATGTCGATAGAGATCCCTGCTCTGCCTCAAGGTACGCTAGCAAATGGCGGCGATCGC
GGTGAATCGACCCAAGAAGTTCGCTTACGAGTTTTGCAAGCAAGAGAGGTCATGTTGGCGCGGTCAGGTAAAGTGAATGC
GCTGCTGCAGAGTCGAGAGATTGAACGCTATTGCCAGTTGGAAAAAGCCGATGCGGAATTTTTAGAAAGTGCCTTGCATC
GATTGGGGCTGTCGATTCGGGCATACCACCGAATTATCAAGGTAGCACGCACGATTGCAGATTTGCAGGGCAAGGATCGA
ATTCAACGAGTACATTTAGCTGAAGCACTTGGTTACCGAGCAATGGATAGGTTGTTGAAGCAGTTAACCGCACAGTCAAT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.982

100

0.87
  comM Vibrio campbellii strain DS40M4

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

67.85

100

0.679
  comM Glaesserella parasuis strain SC1401

65.098

100

0.655
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.44

Multiple sequence alignment