Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAG186_RS08220 Genome accession   NZ_CP152290
Coordinates   1667566..1668039 (-) Length   157 a.a.
NCBI ID   WP_342621629.1    Uniprot ID   -
Organism   Erysipelothrix sp. P66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1662566..1673039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG186_RS08195 dnaB 1662890..1664260 (-) 1371 WP_342621628.1 replicative DNA helicase -
  AAG186_RS08200 rplI 1664272..1664718 (-) 447 WP_125163981.1 50S ribosomal protein L9 -
  AAG186_RS08205 - 1664720..1666675 (-) 1956 WP_161636813.1 DHH family phosphoesterase -
  AAG186_RS08210 - 1666722..1667261 (-) 540 WP_161636814.1 DUF2232 domain-containing protein -
  AAG186_RS08215 rpsR 1667315..1667548 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  AAG186_RS08220 ssb 1667566..1668039 (-) 474 WP_342621629.1 single-stranded DNA-binding protein Machinery gene
  AAG186_RS08225 rpsF 1668065..1668355 (-) 291 WP_018580287.1 30S ribosomal protein S6 -
  AAG186_RS08230 - 1668495..1669133 (-) 639 WP_161636815.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AAG186_RS08235 - 1669195..1670046 (-) 852 WP_342621631.1 LysR family transcriptional regulator -
  AAG186_RS08240 - 1670139..1670702 (+) 564 WP_331836625.1 chromate transporter -
  AAG186_RS08245 - 1670686..1671225 (+) 540 WP_331836624.1 chromate transporter -
  AAG186_RS08250 lysS 1671262..1672746 (-) 1485 WP_342621632.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17518.30 Da        Isoelectric Point: 4.4986

>NTDB_id=988086 AAG186_RS08220 WP_342621629.1 1667566..1668039(-) (ssb) [Erysipelothrix sp. P66]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNHTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQGGNQGGSSYTPSYQPDPDPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=988086 AAG186_RS08220 WP_342621629.1 1667566..1668039(-) (ssb) [Erysipelothrix sp. P66]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACAGGTAAATCAGTCGT
ATCATTTACTGTAGCGTGCAACCGCCGCTTCGGTCAACAAGATGAAACTGATTTCATTAACTGTGTGGCTTGGAATCATA
CAGCTGATTTCATGGCGAATTACTTGCTAAAGGGTGCTTTAGTAGGGCTAGAAGGTCGAATTCAATCGAGATCATACGAA
GATGCTACTGGCAAACGTGTGTATGTTCAAGAGGTAGTTGTGGATACACTTCAGTCACTTGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAGGCGGAAATCAAGGTGGATCAAGTTATACACCTTCATATCAAC
CAGATCCTGACCCATCATTCTCAATGGATGATGAACCTGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

35.754

100

0.408
  ssb Neisseria gonorrhoeae MS11

35.393

100

0.401
  ssb Vibrio cholerae strain A1552

31.694

100

0.369

Multiple sequence alignment