Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AAGT87_RS18065 | Genome accession | NZ_CP152071 |
| Coordinates | 2895908..2896219 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain Sudan_2019_18 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2890908..2901219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGT87_RS18050 (AAGT87_18055) | lon | 2890945..2893305 (+) | 2361 | WP_353495306.1 | endopeptidase La | - |
| AAGT87_RS18055 (AAGT87_18060) | - | 2893489..2893761 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| AAGT87_RS18060 (AAGT87_18065) | ppiD | 2893914..2895773 (+) | 1860 | WP_341264862.1 | peptidylprolyl isomerase | - |
| AAGT87_RS18065 (AAGT87_18070) | comEA | 2895908..2896219 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| AAGT87_RS18070 (AAGT87_18075) | cmk | 2896402..2897079 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| AAGT87_RS18075 (AAGT87_18080) | rpsA | 2897188..2898858 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| AAGT87_RS18080 (AAGT87_18085) | ihfB | 2899146..2899424 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| AAGT87_RS18085 (AAGT87_18090) | - | 2899563..2899844 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| AAGT87_RS18090 (AAGT87_18095) | lapB | 2899856..2901025 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=987144 AAGT87_RS18065 WP_001166105.1 2895908..2896219(+) (comEA) [Vibrio cholerae strain Sudan_2019_18]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=987144 AAGT87_RS18065 WP_001166105.1 2895908..2896219(+) (comEA) [Vibrio cholerae strain Sudan_2019_18]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |