Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHB48_RS10860 Genome accession   NZ_CP152052
Coordinates   2262082..2262408 (-) Length   108 a.a.
NCBI ID   WP_342601357.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2257082..2267408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS10825 (MHB48_10825) - 2257603..2258007 (+) 405 WP_342598103.1 hypothetical protein -
  MHB48_RS10830 (MHB48_10830) - 2258442..2258702 (-) 261 WP_342598104.1 hypothetical protein -
  MHB48_RS10835 (MHB48_10835) - 2258881..2259270 (-) 390 WP_342598105.1 DUF2513 domain-containing protein -
  MHB48_RS10840 (MHB48_10840) - 2259427..2259639 (+) 213 WP_342598106.1 hypothetical protein -
  MHB48_RS10845 (MHB48_10845) - 2259818..2260120 (-) 303 WP_342598107.1 hypothetical protein -
  MHB48_RS10850 (MHB48_10850) - 2260134..2260787 (-) 654 WP_342598108.1 hypothetical protein -
  MHB48_RS10855 (MHB48_10855) - 2260869..2261237 (-) 369 WP_342598109.1 hypothetical protein -
  MHB48_RS10860 (MHB48_10860) ssbA 2262082..2262408 (-) 327 WP_342601357.1 single-stranded DNA-binding protein Machinery gene
  MHB48_RS10865 (MHB48_10865) - 2263519..2265090 (-) 1572 WP_342598110.1 SagB family peptide dehydrogenase -
  MHB48_RS10870 (MHB48_10870) - 2265113..2267056 (-) 1944 WP_342598111.1 TOMM precursor leader peptide-binding protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12127.34 Da        Isoelectric Point: 7.1637

>NTDB_id=986974 MHB48_RS10860 WP_342601357.1 2262082..2262408(-) (ssbA) [Psychrobacillus sp. FSL H8-0483]
MINRIVLVGRLTKDPELRYTPSGVTMARFTLAGGEGRIQTGSYQGQDGKRDHTTDVDVESMQFIEQKNGQVSQNNAPKGQ
PQEHQRRSSEYQQPQADPFTNNNCPVSY

Nucleotide


Download         Length: 327 bp        

>NTDB_id=986974 MHB48_RS10860 WP_342601357.1 2262082..2262408(-) (ssbA) [Psychrobacillus sp. FSL H8-0483]
ATAATTAATAGAATTGTTCTAGTTGGGAGATTAACAAAGGATCCTGAACTTCGATACACTCCAAGTGGTGTAACGATGGC
GAGATTCACTTTAGCAGGAGGTGAAGGTAGAATTCAAACAGGTAGTTACCAGGGACAAGATGGAAAGCGTGATCATACTA
CAGACGTTGATGTAGAGAGCATGCAATTCATTGAACAGAAAAATGGACAGGTATCACAAAACAATGCTCCTAAAGGGCAA
CCTCAAGAGCATCAGAGAAGAAGTTCGGAATATCAACAACCACAAGCAGATCCATTTACTAATAACAATTGTCCGGTATC
TTATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.146

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

29.56

100

0.435
  ssb Neisseria meningitidis MC58

28.169

100

0.37
  ssb Neisseria gonorrhoeae MS11

28.169

100

0.37

Multiple sequence alignment