Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NST80_RS01660 Genome accession   NZ_CP152039
Coordinates   307273..307962 (+) Length   229 a.a.
NCBI ID   WP_002886589.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 302273..312962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS01635 (NST80_01635) - 302506..303336 (+) 831 WP_002886584.1 energy-coupling factor transporter transmembrane component T -
  NST80_RS01640 (NST80_01640) - 303425..304096 (-) 672 WP_014633599.1 TrkA family potassium uptake protein -
  NST80_RS01645 (NST80_01645) - 304136..305500 (-) 1365 WP_118172060.1 potassium transporter TrkG -
  NST80_RS01650 (NST80_01650) rsmG 305569..306282 (-) 714 WP_049529060.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NST80_RS01655 (NST80_01655) - 306581..307117 (+) 537 WP_070579518.1 YceD family protein -
  NST80_RS01660 (NST80_01660) covR 307273..307962 (+) 690 WP_002886589.1 response regulator transcription factor Regulator
  NST80_RS01665 (NST80_01665) covS 307959..309488 (+) 1530 WP_013990062.1 HAMP domain-containing histidine kinase Regulator
  NST80_RS01670 (NST80_01670) nrdR 309610..310089 (+) 480 WP_002886592.1 transcriptional regulator NrdR -
  NST80_RS01675 (NST80_01675) - 310086..311261 (+) 1176 WP_118172061.1 DnaD domain protein -
  NST80_RS01680 (NST80_01680) dnaI 311265..312167 (+) 903 WP_013990064.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26517.51 Da        Isoelectric Point: 4.6354

>NTDB_id=986299 NST80_RS01660 WP_002886589.1 307273..307962(+) (covR) [Streptococcus sp. FSL K6-1323]
MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDIESAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986299 NST80_RS01660 WP_002886589.1 307273..307962(+) (covR) [Streptococcus sp. FSL K6-1323]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAAAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCAGACAACGGACGCGAAGGACTTGAAATGGCACTCGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTTGAAGTAACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGATTCAATCATGGACATTGTTGCTGGTTTGGACCGCGGTGCTGATGACTATATTGTAAAACCATTTGCGATTGA
AGAATTGTTGGCACGTATCCGTGCAACCTTCCGTCGCCAAGATATCGAATCTGCTAAGAATGCACCAGCAAAAGCATCAA
CTTATCGTGATTTGAAATTGGATGTTCAAAACCGTACAGTTGTTCGTGGTGATGAAGCAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTGAGCAATATGAACCAAGTGATGACCCGTGAGGAACTCTTGCTTCAAGTTTGGAAATA
TGATGACGCCATCGAAACAAACGTGGTAGATGTTTATATTCGTTATTTGCGTGGAAAAATCGACGTTCCAGGTAAGGAAT
CATATATTCAAACAGTACGAGGAATGGGTTACGTTATCCGTGAAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

99.563

100

0.996
  covR Lactococcus lactis subsp. lactis strain DGCC12653

68.421

99.563

0.681
  vicR Streptococcus mutans UA159

46.352

100

0.472
  micA Streptococcus pneumoniae Cp1015

44.156

100

0.445

Multiple sequence alignment