Detailed information    

insolico Bioinformatically predicted

Overview

Name   covS   Type   Regulator
Locus tag   NST80_RS01665 Genome accession   NZ_CP152039
Coordinates   307959..309488 (+) Length   509 a.a.
NCBI ID   WP_013990062.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 302959..314488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS01640 (NST80_01640) - 303425..304096 (-) 672 WP_014633599.1 TrkA family potassium uptake protein -
  NST80_RS01645 (NST80_01645) - 304136..305500 (-) 1365 WP_118172060.1 potassium transporter TrkG -
  NST80_RS01650 (NST80_01650) rsmG 305569..306282 (-) 714 WP_049529060.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NST80_RS01655 (NST80_01655) - 306581..307117 (+) 537 WP_070579518.1 YceD family protein -
  NST80_RS01660 (NST80_01660) covR 307273..307962 (+) 690 WP_002886589.1 response regulator transcription factor Regulator
  NST80_RS01665 (NST80_01665) covS 307959..309488 (+) 1530 WP_013990062.1 HAMP domain-containing histidine kinase Regulator
  NST80_RS01670 (NST80_01670) nrdR 309610..310089 (+) 480 WP_002886592.1 transcriptional regulator NrdR -
  NST80_RS01675 (NST80_01675) - 310086..311261 (+) 1176 WP_118172061.1 DnaD domain protein -
  NST80_RS01680 (NST80_01680) dnaI 311265..312167 (+) 903 WP_013990064.1 primosomal protein DnaI -
  NST80_RS01685 (NST80_01685) der 312272..313582 (+) 1311 WP_002886596.1 ribosome biogenesis GTPase Der -
  NST80_RS01690 (NST80_01690) - 313646..314275 (+) 630 WP_118172062.1 ribonuclease P -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 58149.63 Da        Isoelectric Point: 5.3949

>NTDB_id=986300 NST80_RS01665 WP_013990062.1 307959..309488(+) (covS) [Streptococcus sp. FSL K6-1323]
MSKLQDKLFGKVTIRKKLTMTTAVVFFLVLSLFTLVVIFSANTLLLQRERQNVNTTIAKVVTYIEKDWDSDEELSPEPLL
AALYSPKNIYASIINGVLSEKHSLDGQVAISNKLYSNQSVFVYDKKGTFIFTSEENTDSPPGMSEVNKLKSVSYKGKRGF
LLQVPIYGKDKKTIVGYAQIFHDLEFYYALKERLVFLLIFLEVGMTVLVIAATVVVLTSILRPMRQLHETMGVITDSPSD
LELRSKIESHDEIGDLAVNFNRMMDKIQENNQMQMRFLSDVSHELRTPIAVIKGHMDLLQRWGKNDPEILEESLEAASHE
ANRMTIMINDMLDSIRVKGSFENHRNDTCDLNSSIRTVIGNFRVLHEDYQFYLNDFESSERLAQIYSQHFEQAITILIDN
AVKYSPVNKEIQVTIKALEDEMLVQVQDNGEGISKEDINHIFERFYRSDKARNRTTTQSGVGIGLSILYQIVEAYRCRID
VSSELGVGTRFDLYIPFADRETTIPQLEL

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=986300 NST80_RS01665 WP_013990062.1 307959..309488(+) (covS) [Streptococcus sp. FSL K6-1323]
ATGAGTAAATTACAAGATAAATTATTTGGTAAAGTAACCATTAGAAAAAAGTTGACCATGACAACTGCTGTGGTCTTCTT
TCTTGTATTGTCGTTGTTCACTCTGGTTGTTATTTTTTCAGCTAATACGCTTCTTTTGCAACGTGAACGTCAAAATGTAA
ACACTACAATCGCAAAAGTTGTTACTTACATCGAAAAGGATTGGGATTCGGATGAAGAATTAAGTCCAGAACCGCTCTTA
GCGGCTCTTTATTCGCCTAAAAATATCTATGCATCAATTATTAATGGCGTACTTTCTGAAAAGCACTCTTTGGATGGTCA
AGTTGCAATTTCTAATAAATTATATTCAAATCAGTCAGTTTTTGTGTATGACAAAAAAGGAACCTTTATCTTTACTTCTG
AGGAGAATACAGATTCGCCTCCCGGTATGTCCGAGGTAAACAAACTGAAGTCAGTATCCTATAAAGGAAAGCGTGGTTTC
TTACTACAAGTTCCAATTTACGGTAAGGATAAAAAGACCATCGTTGGCTATGCCCAGATTTTCCATGATTTGGAATTCTA
CTATGCTCTTAAAGAGCGTTTGGTTTTCTTGTTGATTTTCCTAGAAGTGGGGATGACTGTCCTAGTTATCGCAGCAACTG
TAGTTGTCTTGACATCTATTCTTCGTCCGATGAGACAGTTGCACGAAACGATGGGAGTTATTACCGATTCGCCAAGTGAT
TTGGAACTTCGTTCTAAGATTGAAAGTCACGATGAAATTGGTGATTTGGCGGTTAACTTTAACCGCATGATGGATAAAAT
TCAAGAAAATAATCAGATGCAGATGCGTTTCTTGAGTGACGTCAGTCATGAATTGCGTACGCCGATTGCGGTTATCAAGG
GGCATATGGACCTCTTGCAACGTTGGGGTAAAAATGACCCTGAGATTCTTGAAGAAAGTCTTGAGGCTGCAAGTCACGAG
GCCAACCGTATGACGATTATGATTAATGATATGTTGGATTCTATCCGTGTCAAAGGATCATTTGAAAATCATAGAAACGA
TACTTGTGATTTGAATTCTTCAATCCGTACGGTTATTGGGAACTTCCGTGTCTTGCATGAAGATTATCAATTTTATCTCA
ATGATTTCGAAAGTTCAGAGCGTCTAGCACAGATTTATAGTCAGCACTTTGAACAGGCGATCACCATTTTGATTGATAAT
GCGGTCAAGTATTCGCCTGTCAATAAGGAAATACAGGTTACTATTAAAGCATTGGAAGATGAAATGTTGGTACAAGTGCA
AGATAACGGTGAGGGGATTTCAAAAGAAGATATCAATCATATTTTTGAACGTTTCTATCGTTCAGATAAGGCACGTAACC
GTACAACAACTCAATCTGGTGTTGGTATTGGTTTGTCAATCCTTTATCAAATTGTGGAAGCTTATCGCTGCCGTATTGAT
GTTAGTTCTGAACTTGGTGTTGGAACACGTTTCGACCTTTACATTCCATTTGCAGATCGAGAAACGACGATACCTCAACT
TGAGCTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(274-333)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(388-497)

ArlS sensor domain (ArlS_N)

(43-191)

HAMP domain (HAMP)

(217-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covS Streptococcus salivarius strain HSISS4

98.428

100

0.984

Multiple sequence alignment