Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKY83_RS09180 Genome accession   NZ_CP152015
Coordinates   1833495..1833875 (+) Length   126 a.a.
NCBI ID   WP_223252879.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0266     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1828495..1838875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY83_RS09170 (MKY83_09170) - 1828985..1832128 (+) 3144 WP_342488588.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  MKY83_RS09175 (MKY83_09175) - 1832324..1833232 (+) 909 WP_106067596.1 trypsin-like serine protease -
  MKY83_RS09180 (MKY83_09180) nucA/comI 1833495..1833875 (+) 381 WP_223252879.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKY83_RS09185 (MKY83_09185) - 1834025..1834871 (+) 847 Protein_1762 STAS domain-containing protein -
  MKY83_RS09190 (MKY83_09190) - 1834905..1835447 (-) 543 WP_065097361.1 IseA DL-endopeptidase inhibitor family protein -
  MKY83_RS09195 (MKY83_09195) - 1835742..1836176 (+) 435 WP_065097362.1 hypothetical protein -
  MKY83_RS09200 (MKY83_09200) lexA 1836223..1836843 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  MKY83_RS09205 (MKY83_09205) yneA 1837003..1837314 (+) 312 WP_044141409.1 cell division suppressor protein YneA -
  MKY83_RS09210 (MKY83_09210) - 1837332..1837979 (+) 648 WP_106067594.1 recombinase family protein -
  MKY83_RS09215 (MKY83_09215) - 1838049..1838279 (+) 231 WP_039167715.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13887.51 Da        Isoelectric Point: 6.9684

>NTDB_id=985029 MKY83_RS09180 WP_223252879.1 1833495..1833875(+) (nucA/comI) [Bacillus sp. FSL M8-0266]
MVTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKDIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWTGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=985029 MKY83_RS09180 WP_223252879.1 1833495..1833875(+) (nucA/comI) [Bacillus sp. FSL M8-0266]
ATGGTCACGCTGTTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCCGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGACATTCCGACTAAACCCGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCGGGCTCATG
GACCGGACACCAGATGAGCGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment