Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ46_RS30240 Genome accession   NZ_CP152008
Coordinates   6696453..6696929 (-) Length   158 a.a.
NCBI ID   WP_007129213.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL M8-0142     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6691453..6701929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ46_RS30225 (NSQ46_30225) - 6692027..6693793 (-) 1767 WP_007129211.1 ABC transporter substrate-binding protein -
  NSQ46_RS30230 (NSQ46_30230) - 6694508..6695182 (-) 675 WP_342575902.1 SOS response-associated peptidase -
  NSQ46_RS30235 (NSQ46_30235) rpsR 6696159..6696431 (-) 273 WP_006207333.1 30S ribosomal protein S18 -
  NSQ46_RS30240 (NSQ46_30240) ssbA 6696453..6696929 (-) 477 WP_007129213.1 single-stranded DNA-binding protein Machinery gene
  NSQ46_RS30245 (NSQ46_30245) rpsF 6696977..6697261 (-) 285 WP_007129214.1 30S ribosomal protein S6 -
  NSQ46_RS30250 (NSQ46_30250) - 6697525..6697719 (+) 195 WP_028406519.1 YjzC family protein -
  NSQ46_RS30260 (NSQ46_30260) - 6698754..6698972 (-) 219 WP_007129216.1 DUF951 domain-containing protein -
  NSQ46_RS30265 (NSQ46_30265) - 6699036..6699857 (-) 822 WP_232239404.1 mechanosensitive ion channel family protein -
  NSQ46_RS30270 (NSQ46_30270) - 6699950..6700204 (-) 255 WP_040738345.1 DUF3343 domain-containing protein -
  NSQ46_RS30275 (NSQ46_30275) yyaC 6700533..6701138 (+) 606 WP_342575923.1 spore protease YyaC -
  NSQ46_RS30280 (NSQ46_30280) - 6701113..6701613 (-) 501 WP_007129220.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17444.19 Da        Isoelectric Point: 4.8536

>NTDB_id=984591 NSQ46_RS30240 WP_007129213.1 6696453..6696929(-) (ssbA) [Paenibacillus sp. FSL M8-0142]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNREGGGGGNREESSFGGGSGSGNRGGNNFSRNNQDPFSDEGKPIDISDDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=984591 NSQ46_RS30240 WP_007129213.1 6696453..6696929(-) (ssbA) [Paenibacillus sp. FSL M8-0142]
TTGTTGAACCGTGTCATTTTGATTGGCCGACTGACTCGGGACCCGGAGCTTAGATATACGCCTTCAGGAGTCGCTGTCAC
ACAATTTACACTTGCTGTAGATCGTCCGTTTACCGGACAAGGCGGGGAGCGCGAGGCGGATTTCATTCCGGTCGTGACCT
GGAGACAGCTTGCGGAGACTTGTGCCAACTATCTGCGTAAAGGCCGGTTGACGGCCGTAGAAGGGCGCATTCAAGTGCGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTCACCGAAGTCATTGCCGATAATGTTCGTTTCTTGGAGTCTAACCG
TGAAGGCGGAGGCGGCGGAAACCGTGAGGAGTCATCGTTCGGCGGAGGAAGCGGCAGCGGAAACCGCGGGGGCAACAACT
TCTCGCGCAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATTTCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.731

65.823

0.373
  ssb Glaesserella parasuis strain SC1401

31.892

100

0.373
  ssb Neisseria meningitidis MC58

32.768

100

0.367

Multiple sequence alignment