Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ95_RS19375 Genome accession   NZ_CP151993
Coordinates   3931305..3931802 (-) Length   165 a.a.
NCBI ID   WP_169359814.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3926305..3936802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS19355 (NSQ95_19355) rplI 3927168..3927617 (-) 450 WP_169359811.1 50S ribosomal protein L9 -
  NSQ95_RS19360 (NSQ95_19360) - 3927614..3929590 (-) 1977 WP_340881216.1 DHH family phosphoesterase -
  NSQ95_RS19365 (NSQ95_19365) - 3929603..3930544 (-) 942 WP_340881215.1 YybS family protein -
  NSQ95_RS19370 (NSQ95_19370) rpsR 3931022..3931258 (-) 237 WP_142540806.1 30S ribosomal protein S18 -
  NSQ95_RS19375 (NSQ95_19375) ssbA 3931305..3931802 (-) 498 WP_169359814.1 single-stranded DNA-binding protein Machinery gene
  NSQ95_RS19380 (NSQ95_19380) rpsF 3931846..3932136 (-) 291 WP_169359815.1 30S ribosomal protein S6 -
  NSQ95_RS19385 (NSQ95_19385) - 3932303..3932860 (+) 558 WP_340881213.1 DUF3267 domain-containing protein -
  NSQ95_RS19390 (NSQ95_19390) ychF 3932881..3933981 (-) 1101 WP_340881211.1 redox-regulated ATPase YchF -
  NSQ95_RS19395 (NSQ95_19395) - 3934067..3934267 (-) 201 WP_169359818.1 DUF951 domain-containing protein -
  NSQ95_RS19400 (NSQ95_19400) - 3934278..3935132 (-) 855 WP_340881208.1 mechanosensitive ion channel family protein -
  NSQ95_RS19405 (NSQ95_19405) yyaC 3935206..3935793 (+) 588 WP_340881207.1 spore protease YyaC -
  NSQ95_RS19410 (NSQ95_19410) - 3935758..3936456 (-) 699 WP_340881205.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18189.91 Da        Isoelectric Point: 4.7719

>NTDB_id=983992 NSQ95_RS19375 WP_169359814.1 3931305..3931802(-) (ssbA) [Psychrobacillus sp. FSL W7-1457]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRGGSGERSQGGQSYGGGQQNSNPTYQQNQPMNQQNYTRVDEDPFGNSSGPIEVSD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=983992 NSQ95_RS19375 WP_169359814.1 3931305..3931802(-) (ssbA) [Psychrobacillus sp. FSL W7-1457]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGATATACACCGAGTGGAGTAGCAATGGC
TAGATTTACACTTGCTGTAAATCGTACATTCTCTAATCAACAAGGTGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAACAAGCAGAAAACACAGCCAATTTCTTGAAAAAAGGAAGTTTAGCAGGTGTAGAAGGCAGAATTCAAACGGGT
AGTTATGAAGGACAAGATGGTAAGCGTGTATATACGACGGATGTTGTCGCAGACAGCGTTCAGTTCTTAGAACCACGTGG
AGGCTCTGGTGAACGTAGCCAAGGTGGACAATCATATGGTGGCGGACAACAGAATTCTAATCCAACATATCAGCAAAACC
AACCAATGAATCAGCAAAACTATACGCGTGTAGATGAAGATCCATTTGGAAATAGTAGCGGTCCGATAGAAGTATCGGAT
GACGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.943

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.552
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

64.242

0.4
  ssb Neisseria meningitidis MC58

35.227

100

0.376
  ssb Neisseria gonorrhoeae MS11

35.227

100

0.376

Multiple sequence alignment