Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN20J_RS34370 Genome accession   NZ_CP183383
Coordinates   7787213..7788838 (+) Length   541 a.a.
NCBI ID   WP_419667501.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7782213..7793838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS34340 (ACN20J_34335) lepB 7782910..7783995 (+) 1086 WP_189843564.1 signal peptidase I -
  ACN20J_RS34345 (ACN20J_34340) lepB 7783880..7784845 (+) 966 WP_419667499.1 signal peptidase I -
  ACN20J_RS34350 (ACN20J_34345) lepB 7784926..7785672 (+) 747 WP_361909840.1 signal peptidase I -
  ACN20J_RS34355 (ACN20J_34350) - 7785785..7786336 (+) 552 WP_419667500.1 NUDIX hydrolase -
  ACN20J_RS34360 (ACN20J_34355) - 7786392..7786700 (+) 309 WP_055510545.1 DUF2469 domain-containing protein -
  ACN20J_RS34365 (ACN20J_34360) - 7786842..7787213 (+) 372 WP_189843561.1 YraN family protein -
  ACN20J_RS34370 (ACN20J_34365) comM 7787213..7788838 (+) 1626 WP_419667501.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN20J_RS34375 (ACN20J_34370) dprA 7788835..7790064 (+) 1230 WP_419667502.1 DNA-processing protein DprA -
  ACN20J_RS34380 (ACN20J_34375) whiG 7790337..7791173 (+) 837 WP_189843558.1 RNA polymerase sigma factor WhiG -
  ACN20J_RS34385 (ACN20J_34380) - 7791340..7791897 (+) 558 WP_190232323.1 TetR/AcrR family transcriptional regulator -
  ACN20J_RS34390 (ACN20J_34385) - 7792067..7792555 (+) 489 WP_419667503.1 PPOX class F420-dependent oxidoreductase -
  ACN20J_RS34395 (ACN20J_34390) - 7792552..7793220 (-) 669 WP_419667504.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56840.99 Da        Isoelectric Point: 6.5042

>NTDB_id=983121 ACN20J_RS34370 WP_419667501.1 7787213..7788838(+) (comM) [Streptomyces sp. 2-1]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESKDRVRAAVVNSGGEWPQKKLTVGLSPASVPKSGSG
FDLAIACAALGASERIDPRVLSDIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLTDEPVPDEEPDEQGRPDPLLAGLRMPGTGAATGMHSMGAMQHDHGHDLADVVGQHSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAILPRLTRGESLEVTAVHSVAGLLPPGKPLVDVAPYCAPHHSATMQALVGGGQGIARPGAVSL
SHRGVLFLDETPEFSSHALDALRQPLESGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDSLCECPSSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRSELTERGARGESTETVADRVRAARERAAARLTDTPWRTNSEVPGRELRSRWYASPGAMDD
AERSLERGVLTARGLDRVLRVAWTVADLVGHDRPDVTDVALALQLRTGVPRGVPMAIGALP

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=983121 ACN20J_RS34370 WP_419667501.1 7787213..7788838(+) (comM) [Streptomyces sp. 2-1]
ATGGGATTCGCGCGTACGTGCTCGGTGGCCCTCGTCGGTGTGGAGGGCGTCGTCGTCGAGGTCCAGGCGGACCTGGAGCC
CGGGGTCGCGGCGTTCACGCTGGTCGGCCTGCCCGACAAGAGCCTGACGGAGAGCAAGGACCGGGTGCGGGCGGCCGTGG
TCAACTCCGGCGGCGAGTGGCCGCAGAAGAAGCTCACGGTGGGCCTCAGCCCGGCCTCGGTGCCCAAGAGCGGCAGCGGA
TTCGACCTGGCCATCGCTTGCGCGGCACTCGGGGCCTCCGAGCGCATCGACCCACGGGTGCTCTCCGACATCGTGATGAT
CGGCGAGCTCGGCCTGGACGGGCGGGTCCGGCCCGTCCGGGGTGTGCTGCCGGCCGTGCTGGCCGCGGCGGACGCGGGAT
ACGAGCAGGTGGTGGTGCCGGAATGCGCCGCCGCCGAGGCCTCGCTGGTGCCCGGGGTGTCCGTGCTAGGCGTCCGCAGT
CTCCGGCAGCTGATCGCCGTCCTCACGGACGAACCGGTGCCCGACGAGGAGCCCGACGAGCAGGGCCGCCCGGATCCGCT
GCTCGCGGGCCTGCGCATGCCGGGGACGGGCGCGGCCACGGGCATGCACAGCATGGGCGCCATGCAGCACGACCACGGAC
ACGACCTCGCCGACGTCGTGGGCCAGCACTCGGCACGGACGGCGGTGGAGGTCGCCGCGGCCGGCGGGCACCACCTGTTC
CTCGAAGGTCCACCGGGGGCGGGCAAGACGATGCTCGCCGAGCGACTTCCGGCCATCCTGCCGAGGCTCACCCGTGGCGA
GTCCCTGGAGGTCACAGCCGTCCACTCGGTCGCGGGCCTGCTGCCACCGGGCAAACCGCTGGTCGACGTCGCGCCCTACT
GCGCACCGCACCATTCGGCGACCATGCAGGCGCTCGTCGGAGGCGGCCAGGGAATCGCACGGCCGGGCGCGGTGTCGCTC
TCCCACCGGGGAGTGCTCTTCCTCGACGAGACCCCCGAGTTCAGCAGCCACGCCCTCGACGCCCTGCGCCAGCCCCTGGA
ATCGGGGCACGTGGTGATCGCGCGCAGCGCCGGAGTCGTGCGCTTCCCTGCCCGGTTCCTCATGGTGCTCGCGGCGAATC
CATGTCCTTGTGGCCGCTTCTCGCAGCGCGACAGTTTGTGCGAGTGCCCGTCCTCCGCGATCCGCCGCTACCAGGCGAGG
CTCTCCGGACCGCTGCTCGACCGGGTCGACCTGAGGGTCGAGGTGGACCGCGTCACCCGGTCCGAGCTCACGGAGAGGGG
CGCGCGGGGCGAATCCACCGAGACGGTCGCCGACCGGGTACGGGCAGCCAGGGAGCGGGCCGCGGCCCGGCTTACGGACA
CTCCCTGGCGGACCAACAGCGAAGTGCCGGGGCGGGAGCTGCGCAGCCGTTGGTACGCCTCCCCGGGAGCCATGGACGAC
GCCGAGCGCAGTCTGGAGCGCGGCGTGCTCACCGCGCGCGGACTCGACCGTGTCCTGCGCGTCGCCTGGACCGTCGCGGA
CCTGGTGGGACACGACCGGCCCGACGTGACGGACGTGGCTCTCGCCCTGCAACTGCGCACCGGGGTCCCCCGGGGGGTGC
CCATGGCGATCGGGGCGCTGCCGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.962

98.521

0.394
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.705

94.455

0.384
  comM Vibrio cholerae strain A1552

40.705

94.455

0.384
  comM Acinetobacter baylyi ADP1

40.157

93.9

0.377
  comM Haemophilus influenzae Rd KW20

37.736

97.967

0.37
  comM Glaesserella parasuis strain SC1401

37.358

97.967

0.366
  comM Legionella pneumophila str. Paris

36.636

98.891

0.362
  comM Legionella pneumophila strain ERS1305867

36.636

98.891

0.362