Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHH57_RS25485 Genome accession   NZ_CP151963
Coordinates   5751805..5752284 (-) Length   159 a.a.
NCBI ID   WP_069012449.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0442     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5746805..5757284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH57_RS25465 (MHH57_25465) opp4C 5747283..5748206 (-) 924 WP_029518954.1 oligopeptide ABC transporter permease -
  MHH57_RS25470 (MHH57_25470) - 5748218..5749180 (-) 963 WP_023991143.1 ABC transporter permease -
  MHH57_RS25475 (MHH57_25475) - 5749249..5750988 (-) 1740 WP_342434687.1 ABC transporter substrate-binding protein -
  MHH57_RS25480 (MHH57_25480) rpsR 5751511..5751783 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  MHH57_RS25485 (MHH57_25485) ssbA 5751805..5752284 (-) 480 WP_069012449.1 single-stranded DNA-binding protein Machinery gene
  MHH57_RS25490 (MHH57_25490) rpsF 5752334..5752618 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  MHH57_RS25495 (MHH57_25495) - 5752937..5753131 (+) 195 WP_029518958.1 YjzC family protein -
  MHH57_RS25500 (MHH57_25500) - 5753498..5753815 (+) 318 WP_029518959.1 hypothetical protein -
  MHH57_RS25510 (MHH57_25510) - 5754204..5754428 (-) 225 WP_025723137.1 DUF951 domain-containing protein -
  MHH57_RS25515 (MHH57_25515) - 5754418..5755368 (-) 951 WP_340933823.1 mechanosensitive ion channel family protein -
  MHH57_RS25520 (MHH57_25520) yyaC 5755627..5756232 (+) 606 WP_165145432.1 spore protease YyaC -
  MHH57_RS25525 (MHH57_25525) - 5756186..5756707 (-) 522 WP_165145430.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17567.29 Da        Isoelectric Point: 4.8369

>NTDB_id=982407 MHH57_RS25485 WP_069012449.1 5751805..5752284(-) (ssbA) [Paenibacillus sp. FSL H7-0442]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=982407 MHH57_RS25485 WP_069012449.1 5751805..5752284(-) (ssbA) [Paenibacillus sp. FSL H7-0442]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTGGACGCGGGAATA
ATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.629
  ssb Latilactobacillus sakei subsp. sakei 23K

50.581

100

0.547
  ssb Neisseria meningitidis MC58

35.393

100

0.396
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.769

65.409

0.365

Multiple sequence alignment