Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSS81_RS12105 Genome accession   NZ_CP151943
Coordinates   2468460..2468984 (-) Length   174 a.a.
NCBI ID   WP_342433740.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2463460..2473984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS12085 (NSS81_12085) rplI 2464655..2465104 (-) 450 WP_342433736.1 50S ribosomal protein L9 -
  NSS81_RS12090 (NSS81_12090) - 2465101..2467074 (-) 1974 WP_342433737.1 DHH family phosphoesterase -
  NSS81_RS12095 (NSS81_12095) - 2467101..2468045 (-) 945 WP_342433738.1 YybS family protein -
  NSS81_RS12100 (NSS81_12100) rpsR 2468174..2468413 (-) 240 WP_342433739.1 30S ribosomal protein S18 -
  NSS81_RS12105 (NSS81_12105) ssbA 2468460..2468984 (-) 525 WP_342433740.1 single-stranded DNA-binding protein Machinery gene
  NSS81_RS12110 (NSS81_12110) rpsF 2469057..2469344 (-) 288 WP_342433741.1 30S ribosomal protein S6 -
  NSS81_RS12115 (NSS81_12115) ychF 2469572..2470672 (-) 1101 WP_342433742.1 redox-regulated ATPase YchF -
  NSS81_RS12120 (NSS81_12120) - 2470805..2472790 (-) 1986 WP_342433743.1 molybdopterin-dependent oxidoreductase -
  NSS81_RS12125 (NSS81_12125) - 2472873..2473070 (-) 198 WP_342433744.1 DUF951 domain-containing protein -
  NSS81_RS12130 (NSS81_12130) - 2473093..2473971 (-) 879 WP_342433745.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19418.35 Da        Isoelectric Point: 5.3030

>NTDB_id=981537 NSS81_RS12105 WP_342433740.1 2468460..2468984(-) (ssbA) [Neobacillus sp. FSL H8-0543]
MINRVVLVGRLTKDPELKYTPNGIAVATFTLAVNRQFSNPQGEREADFLNIVVWRKAAENVANYLKKGSLAGVDGRIQVR
TYEQDGKRQYFTEIVADNVQFLEPKGSSGGGRNNNDQFGAPPREPQGSPYGNSNNQNQRPAQNQNQNNNKFQRMDEDPFA
GNGQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=981537 NSS81_RS12105 WP_342433740.1 2468460..2468984(-) (ssbA) [Neobacillus sp. FSL H8-0543]
ATGATAAATCGTGTTGTCCTTGTTGGCCGTTTAACGAAAGATCCTGAACTGAAATACACACCAAACGGCATTGCAGTTGC
TACTTTTACTCTTGCGGTAAATCGTCAATTTTCAAATCCGCAAGGTGAAAGAGAAGCAGACTTCCTTAATATAGTTGTTT
GGCGAAAAGCAGCTGAAAATGTTGCTAACTACCTTAAAAAGGGCAGTTTAGCAGGGGTTGATGGTCGAATTCAAGTTCGT
ACTTACGAACAAGATGGAAAGCGTCAGTATTTTACAGAGATTGTAGCGGATAATGTTCAATTTCTTGAACCTAAGGGCTC
TTCTGGCGGCGGTAGAAACAACAATGATCAATTCGGTGCTCCACCTAGGGAACCGCAAGGATCTCCTTATGGTAACAGCA
ACAATCAGAATCAACGCCCTGCTCAAAACCAGAATCAAAACAATAATAAATTTCAGCGAATGGACGAGGACCCGTTTGCA
GGGAATGGTCAAATTGACATCTCTGATGACGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.906

100

0.592
  ssb Latilactobacillus sakei subsp. sakei 23K

53.005

100

0.557
  ssb Neisseria meningitidis MC58

36.413

100

0.385
  ssb Neisseria gonorrhoeae MS11

36.413

100

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

60.92

0.368

Multiple sequence alignment