Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NSU09_RS14620 Genome accession   NZ_CP151942
Coordinates   2720015..2720446 (-) Length   143 a.a.
NCBI ID   WP_029726720.1    Uniprot ID   -
Organism   Bacillus sp. PS194     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2715015..2725446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU09_RS14570 (NSU09_14570) sinI 2715208..2715381 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSU09_RS14575 (NSU09_14575) sinR 2715415..2715750 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSU09_RS14580 (NSU09_14580) tasA 2715843..2716628 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  NSU09_RS14585 (NSU09_14585) - 2716692..2717264 (-) 573 WP_072692741.1 signal peptidase I -
  NSU09_RS14590 (NSU09_14590) tapA 2717248..2718009 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  NSU09_RS14595 (NSU09_14595) - 2718281..2718607 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSU09_RS14600 (NSU09_14600) - 2718649..2718828 (-) 180 WP_029726723.1 YqzE family protein -
  NSU09_RS14605 (NSU09_14605) comGG 2718900..2719274 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  NSU09_RS14610 (NSU09_14610) comGF 2719275..2719658 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  NSU09_RS14615 (NSU09_14615) comGE 2719684..2720031 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NSU09_RS14620 (NSU09_14620) comGD 2720015..2720446 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  NSU09_RS14625 (NSU09_14625) comGC 2720436..2720732 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  NSU09_RS14630 (NSU09_14630) comGB 2720746..2721783 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  NSU09_RS14635 (NSU09_14635) comGA 2721770..2722840 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NSU09_RS14640 (NSU09_14640) - 2723053..2723250 (-) 198 WP_029726717.1 hypothetical protein -
  NSU09_RS14645 (NSU09_14645) corA 2723252..2724205 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16151.72 Da        Isoelectric Point: 9.9080

>NTDB_id=981478 NSU09_RS14620 WP_029726720.1 2720015..2720446(-) (comGD) [Bacillus sp. PS194]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQVAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=981478 NSU09_RS14620 WP_029726720.1 2720015..2720446(-) (comGD) [Bacillus sp. PS194]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGGTTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTATATGATATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

95.804

100

0.958

Multiple sequence alignment