Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAFX31_RS17165 | Genome accession | NZ_CP151941 |
| Coordinates | 1929547..1930101 (+) | Length | 184 a.a. |
| NCBI ID | WP_061033509.1 | Uniprot ID | A0A2S7VB43 |
| Organism | Vibrio chagasii strain TBV018 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1924547..1935101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX31_RS17150 (AAFX31_17170) | uvrA | 1924609..1927440 (-) | 2832 | WP_171761888.1 | excinuclease ABC subunit UvrA | - |
| AAFX31_RS17155 (AAFX31_17175) | galU | 1927590..1928462 (-) | 873 | WP_019826989.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AAFX31_RS17160 (AAFX31_17180) | qstR | 1928620..1929267 (-) | 648 | WP_116869929.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AAFX31_RS17165 (AAFX31_17185) | ssb | 1929547..1930101 (+) | 555 | WP_061033509.1 | single-stranded DNA-binding protein | Machinery gene |
| AAFX31_RS17170 (AAFX31_17190) | csrD | 1930263..1932278 (+) | 2016 | WP_061033510.1 | RNase E specificity factor CsrD | - |
| AAFX31_RS17175 (AAFX31_17195) | - | 1932281..1933723 (+) | 1443 | WP_171761889.1 | MSHA biogenesis protein MshI | - |
| AAFX31_RS17180 (AAFX31_17200) | pilO | 1933723..1934370 (+) | 648 | WP_171761890.1 | type 4a pilus biogenesis protein PilO | - |
| AAFX31_RS17185 (AAFX31_17205) | - | 1934363..1934695 (+) | 333 | WP_019826977.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20229.37 Da Isoelectric Point: 5.2358
>NTDB_id=981422 AAFX31_RS17165 WP_061033509.1 1929547..1930101(+) (ssb) [Vibrio chagasii strain TBV018]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=981422 AAFX31_RS17165 WP_061033509.1 1929547..1930101(+) (ssb) [Vibrio chagasii strain TBV018]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCGCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACCTACGCAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTTGTGGTTCAAGGCTT
TAACGGCGTTATGCAAATGCTAGGCGGTCGTGCTCAAGGTGGCGCACCAGCTCAAGGCGGCATGGGTGGCCAACAACAGC
AAGGTGGTTGGGGTCAACCTCAGCAGCCGCAACAACAGCAGCAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAA
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCGCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACCTACGCAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTTGTGGTTCAAGGCTT
TAACGGCGTTATGCAAATGCTAGGCGGTCGTGCTCAAGGTGGCGCACCAGCTCAAGGCGGCATGGGTGGCCAACAACAGC
AAGGTGGTTGGGGTCAACCTCAGCAGCCGCAACAACAGCAGCAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
82.162 |
100 |
0.826 |
| ssb | Glaesserella parasuis strain SC1401 |
54.404 |
100 |
0.571 |
| ssb | Neisseria meningitidis MC58 |
46.995 |
99.457 |
0.467 |
| ssb | Neisseria gonorrhoeae MS11 |
46.995 |
99.457 |
0.467 |