Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | AAFX31_RS17160 | Genome accession | NZ_CP151941 |
| Coordinates | 1928620..1929267 (-) | Length | 215 a.a. |
| NCBI ID | WP_116869929.1 | Uniprot ID | - |
| Organism | Vibrio chagasii strain TBV018 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1923620..1934267
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX31_RS17150 (AAFX31_17170) | uvrA | 1924609..1927440 (-) | 2832 | WP_171761888.1 | excinuclease ABC subunit UvrA | - |
| AAFX31_RS17155 (AAFX31_17175) | galU | 1927590..1928462 (-) | 873 | WP_019826989.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AAFX31_RS17160 (AAFX31_17180) | qstR | 1928620..1929267 (-) | 648 | WP_116869929.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AAFX31_RS17165 (AAFX31_17185) | ssb | 1929547..1930101 (+) | 555 | WP_061033509.1 | single-stranded DNA-binding protein | Machinery gene |
| AAFX31_RS17170 (AAFX31_17190) | csrD | 1930263..1932278 (+) | 2016 | WP_061033510.1 | RNase E specificity factor CsrD | - |
| AAFX31_RS17175 (AAFX31_17195) | - | 1932281..1933723 (+) | 1443 | WP_171761889.1 | MSHA biogenesis protein MshI | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25035.22 Da Isoelectric Point: 9.4458
>NTDB_id=981421 AAFX31_RS17160 WP_116869929.1 1928620..1929267(-) (qstR) [Vibrio chagasii strain TBV018]
MRKSRYARTLHFMCIDPSDTYIHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYKEVPKLLAICPNLTVMWKNNE
IILFNVPQQLPTSELLTYGVLKGLFYNTDKKDKIALGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
MRKSRYARTLHFMCIDPSDTYIHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYKEVPKLLAICPNLTVMWKNNE
IILFNVPQQLPTSELLTYGVLKGLFYNTDKKDKIALGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
Nucleotide
Download Length: 648 bp
>NTDB_id=981421 AAFX31_RS17160 WP_116869929.1 1928620..1929267(-) (qstR) [Vibrio chagasii strain TBV018]
ATGAGAAAGTCTCGATACGCTCGCACTTTACACTTTATGTGCATCGACCCAAGTGATACTTACATACATGTAAAAGAGAT
AGAAAAACACCTATCTATCATCTTGTATAAGATGACGCCAGACGACTTAATGTTGGTAGACAGAAAGCAGAGTAATCGTA
TTCTTCTTGTCGACTATAAAGAAGTACCAAAGCTATTGGCTATCTGCCCTAATTTGACCGTGATGTGGAAGAATAATGAG
ATCATTTTGTTTAATGTCCCACAGCAACTGCCGACCTCAGAGCTTTTGACTTATGGTGTATTAAAAGGACTGTTTTATAA
CACCGATAAAAAAGACAAGATTGCTCTTGGTTTACAAGAGGTAATCGATGGCGATAACTGGCTGCCAAGAAAGGTCACCA
ACCAACTGCTGTTTTACTACCGTAATATGGTCAATACCAACACAACGCCTACCAATGTTGATCTCACTATTCGCGAGATT
CAGGTCATTCGTTGCCTCCAATCAGGCTCATCGAACACACAAATAGCCGATGATCTCTTTATCAGCGAGTTCACAGTTAA
GTCCCATCTTTATCAGATATTTCGCAAGCTGGCAGTAAAAAATAGAGTCCAAGCGATAGCATGGGCCAACCAGAACCTGC
TTGCATAA
ATGAGAAAGTCTCGATACGCTCGCACTTTACACTTTATGTGCATCGACCCAAGTGATACTTACATACATGTAAAAGAGAT
AGAAAAACACCTATCTATCATCTTGTATAAGATGACGCCAGACGACTTAATGTTGGTAGACAGAAAGCAGAGTAATCGTA
TTCTTCTTGTCGACTATAAAGAAGTACCAAAGCTATTGGCTATCTGCCCTAATTTGACCGTGATGTGGAAGAATAATGAG
ATCATTTTGTTTAATGTCCCACAGCAACTGCCGACCTCAGAGCTTTTGACTTATGGTGTATTAAAAGGACTGTTTTATAA
CACCGATAAAAAAGACAAGATTGCTCTTGGTTTACAAGAGGTAATCGATGGCGATAACTGGCTGCCAAGAAAGGTCACCA
ACCAACTGCTGTTTTACTACCGTAATATGGTCAATACCAACACAACGCCTACCAATGTTGATCTCACTATTCGCGAGATT
CAGGTCATTCGTTGCCTCCAATCAGGCTCATCGAACACACAAATAGCCGATGATCTCTTTATCAGCGAGTTCACAGTTAA
GTCCCATCTTTATCAGATATTTCGCAAGCTGGCAGTAAAAAATAGAGTCCAAGCGATAGCATGGGCCAACCAGAACCTGC
TTGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
53.023 |
100 |
0.53 |
| qstR | Vibrio campbellii strain DS40M4 |
53.023 |
100 |
0.53 |
| qstR | Vibrio cholerae strain A1552 |
47.664 |
99.535 |
0.474 |