Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAFX31_RS15430 Genome accession   NZ_CP151941
Coordinates   1564242..1565765 (-) Length   507 a.a.
NCBI ID   WP_061033961.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1559242..1570765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS15405 (AAFX31_15420) - 1559270..1559533 (+) 264 WP_239938174.1 YihD family protein -
  AAFX31_RS15410 (AAFX31_15425) ccoG 1559858..1561276 (+) 1419 WP_008221279.1 cytochrome c oxidase accessory protein CcoG -
  AAFX31_RS15415 (AAFX31_15430) - 1561348..1562334 (+) 987 WP_061033964.1 serine/threonine protein kinase -
  AAFX31_RS15420 (AAFX31_15435) - 1562390..1562989 (+) 600 WP_061033963.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAFX31_RS15425 (AAFX31_15440) - 1563222..1564175 (+) 954 WP_061033962.1 DUF2860 domain-containing protein -
  AAFX31_RS15430 (AAFX31_15445) comM 1564242..1565765 (-) 1524 WP_061033961.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAFX31_RS15435 (AAFX31_15450) ilvG 1566237..1567883 (+) 1647 WP_137407561.1 acetolactate synthase 2 catalytic subunit -
  AAFX31_RS15440 (AAFX31_15455) ilvM 1567885..1568169 (+) 285 WP_004739310.1 acetolactate synthase 2 small subunit -
  AAFX31_RS15445 (AAFX31_15460) - 1568182..1569135 (+) 954 WP_061033959.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55515.59 Da        Isoelectric Point: 7.6192

>NTDB_id=981417 AAFX31_RS15430 WP_061033961.1 1564242..1565765(-) (comM) [Vibrio chagasii strain TBV018]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEQHQVDVSELRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPDMSD
DEAMETASVASLTQQEINQYNWKQRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLIGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGTLAEGGDR
GETTQVVKQRVKQARQTMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=981417 AAFX31_RS15430 WP_061033961.1 1564242..1565765(-) (comM) [Vibrio chagasii strain TBV018]
ATGGGACTCGCGATAATTCATAGTCGGGCTAGTGTGGGGGTTGAGGCGCCAGAAGTGACAGTTGAGGTGCATATTAGTAA
CGGAATGCCCGGTTTCACGCTGGTGGGCTTACCTGAGACAACGGTTAAAGAGTCCAAGGACAGAGTCAGAAGCGCCATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTCAACCTTGCTCCTGCTGACTTGCCCAAAGAGGGAGGTCGT
TTTGATTTGCCAATCGCGCTTGGGATTTTGGTCGCCTCTGATCAGTTACCCACATCAAAAATAGCGCAGCATGAATTTAT
TGGTGAGTTGGCACTGTCTGGAGAGTTGCGTTCAGTGAAAGGGGTTCTGCCAGCGACACTGGCTGCGGACAGCGTTGAGC
GTTGCTTGGTGGTACCGCATCACAATGGTGATCAGGCAGCATTAGTTGGTAAAGGGGCGCATAAATCGGCTCAAACCCTG
TTAGAAGTTTGTGCGGATATGTGTGGCCAGGCTCAATTGGGGTTGTATCGCACTGAGCAACATCAAGTCGATGTATCTGA
GCTTCGCGACTTGCAAGACATCATTGGTCAACAACAAGGTAAGCGAGCATTGGAGATAGCAGCGGCGGGTAACCATAACT
TACTATTTCTCGGGCCTCCCGGAACGGGCAAGACCATGTTGGCGTCTCGTCTGCGTGATTTGTTACCTGACATGAGTGAT
GACGAAGCGATGGAAACGGCATCGGTCGCTTCTTTGACTCAACAAGAGATTAATCAGTACAACTGGAAGCAACGTCCTTT
TCGTGCTCCACATCATTCGAGTTCAATGGCGGCACTGGTAGGTGGTGGCTCTGTACCTCGGCCCGGCGAGATCTCTTTGG
CGCACAATGGCCTACTGTTTCTTGATGAGATGCCTGAGTTTGAGCGTAAGGTTCTCGATTCATTGCGCGAACCACTGGAG
TCGGGTGAAATCATTATCTCTCGGGTGGCAGGCAAAACTCGCTTTCCTGCGCGCTTCCAATTAATCGGAGCATTGAACCC
TAGCCCGACTGGTTACTATGAGGGTAATCAAGCACGCGCTAACCCGCAGATTATATTGCGCTACCTCAATCGGCTATCAG
GTCCGTTGCTTGATCGGTTTGATATGTCTCTAGAGATCCCACTTCTGCCTAAAGGAACGCTCGCTGAAGGTGGTGATCGC
GGCGAAACCACCCAAGTCGTGAAGCAAAGGGTTAAACAGGCTCGTCAAACCATGTTGTCTAGGAACCATAAATCGAATGC
ACTGCTCGGTAGTCGAGAAATTGAAAAGTACTGTCCACTGCGACGCGAAGATGCGGAGTTTCTCGAAACAGCACTGCATC
GTTTGGGTTTGTCGATTCGTGCCTATCACCGAATCATCAAGGTCGCACGAACTATTGCTGATCTGGATGGTAACGAGCAG
ATAGAAAAGAAACACTTATCCGAAGCACTTGGTTACCGCGCGATGGATAGATTATTGAAGCAACTTACAGCACAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

62.695

100

0.633
  comM Legionella pneumophila str. Paris

49.296

98.028

0.483
  comM Legionella pneumophila strain ERS1305867

49.296

98.028

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.7

99.803

0.416

Multiple sequence alignment