Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AAFX31_RS14195 | Genome accession | NZ_CP151941 |
| Coordinates | 1299218..1299829 (-) | Length | 203 a.a. |
| NCBI ID | WP_171762284.1 | Uniprot ID | - |
| Organism | Vibrio chagasii strain TBV018 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1294218..1304829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX31_RS14175 (AAFX31_14185) | aroB | 1295150..1296238 (-) | 1089 | WP_411062190.1 | 3-dehydroquinate synthase | - |
| AAFX31_RS14180 (AAFX31_14190) | aroK | 1296264..1296782 (-) | 519 | WP_004737165.1 | shikimate kinase AroK | - |
| AAFX31_RS14185 (AAFX31_14195) | pilQ | 1296959..1298677 (-) | 1719 | WP_105057647.1 | type IV pilus secretin PilQ | Machinery gene |
| AAFX31_RS14190 (AAFX31_14200) | pilP | 1298713..1299231 (-) | 519 | WP_061033622.1 | pilus assembly protein PilP | Machinery gene |
| AAFX31_RS14195 (AAFX31_14205) | pilO | 1299218..1299829 (-) | 612 | WP_171762284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAFX31_RS14200 (AAFX31_14210) | pilN | 1299822..1300421 (-) | 600 | WP_008222290.1 | PilN domain-containing protein | Machinery gene |
| AAFX31_RS14205 (AAFX31_14215) | pilM | 1300405..1301430 (-) | 1026 | WP_116871578.1 | type IV pilus assembly protein PilM | Machinery gene |
| AAFX31_RS14210 (AAFX31_14220) | - | 1301582..1304143 (+) | 2562 | WP_061033618.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 23330.76 Da Isoelectric Point: 4.4188
>NTDB_id=981411 AAFX31_RS14195 WP_171762284.1 1299218..1299829(-) (pilO) [Vibrio chagasii strain TBV018]
MASLQGVMSLQELDIDEITEWPLLPQLLVILLLVALIQGLGTWFYILPLDDELQQMKQQEQTLKATLRIKANKVAALPKL
QGQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNKAFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MASLQGVMSLQELDIDEITEWPLLPQLLVILLLVALIQGLGTWFYILPLDDELQQMKQQEQTLKATLRIKANKVAALPKL
QGQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNKAFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 612 bp
>NTDB_id=981411 AAFX31_RS14195 WP_171762284.1 1299218..1299829(-) (pilO) [Vibrio chagasii strain TBV018]
ATGGCTAGCCTTCAAGGCGTGATGAGCCTGCAAGAGCTTGATATCGATGAGATCACCGAGTGGCCACTGTTGCCTCAGTT
ATTGGTGATTCTATTGCTGGTGGCGCTCATTCAAGGGCTGGGAACCTGGTTCTATATTTTGCCTTTGGATGATGAGCTAC
AACAGATGAAGCAGCAAGAGCAGACCTTGAAAGCAACACTGCGCATCAAAGCCAATAAGGTTGCTGCTTTACCTAAGCTT
CAGGGCCAACTGGATGAACTCACCAGTCGCTATGATTACCTGTTAGAACAGCTTCCCGTGCAAAAGGAGTTGGCAAGCAT
GTTGGCATCAGTCAATGAGCTTGGCTTAGATAACTCACTAACCTTTACCCGAATCGACTGGGGTGAAAAACAGAACAAAG
CCTTCTTATACCGCTTACCTCTTAATATCGAGCTGACTGGTGATTACCACGAGATAGGCGACTTCTCTGCAGCTATCGCT
AAGCTTCCACGAATCATCAGCTTTGATGATGTGAATTGGCAGCGAGTCAGCCAAGAAAGTAGCACTCTGCACTTTAGGGT
TCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
ATGGCTAGCCTTCAAGGCGTGATGAGCCTGCAAGAGCTTGATATCGATGAGATCACCGAGTGGCCACTGTTGCCTCAGTT
ATTGGTGATTCTATTGCTGGTGGCGCTCATTCAAGGGCTGGGAACCTGGTTCTATATTTTGCCTTTGGATGATGAGCTAC
AACAGATGAAGCAGCAAGAGCAGACCTTGAAAGCAACACTGCGCATCAAAGCCAATAAGGTTGCTGCTTTACCTAAGCTT
CAGGGCCAACTGGATGAACTCACCAGTCGCTATGATTACCTGTTAGAACAGCTTCCCGTGCAAAAGGAGTTGGCAAGCAT
GTTGGCATCAGTCAATGAGCTTGGCTTAGATAACTCACTAACCTTTACCCGAATCGACTGGGGTGAAAAACAGAACAAAG
CCTTCTTATACCGCTTACCTCTTAATATCGAGCTGACTGGTGATTACCACGAGATAGGCGACTTCTCTGCAGCTATCGCT
AAGCTTCCACGAATCATCAGCTTTGATGATGTGAATTGGCAGCGAGTCAGCCAAGAAAGTAGCACTCTGCACTTTAGGGT
TCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
77.436 |
96.059 |
0.744 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
93.103 |
0.665 |